GBrowse Details

Vigan.07G143500.01

Basic Information:
Name: Vigan.07G143500.01
Multiple alignment
Variant Information
Position: Chr07:17630480..17637440 (+ strand)
Length: 6961
Functional Information:
Description: Similar to Uncharacterized protein. [K7M270, Glycine max]
GO: Biological Process: biosynthetic process (GO:0009058)
Molecular Function: GDP-Man:Man1GlcNAc2-PP-Dol alpha-1,3-mannosyltransferase activity (GO:0004378)
Molecular Function: glycolipid 6-alpha-mannosyltransferase activity (GO:0033164)
InterPro: Glycosyl transferase, family 1 (IPR001296)
Alpha-1,3/1,6-mannosyltransferase ALG2 (IPR027054)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.83,6.57,7.06,5.65,11.27,4.33,9.50,6.14
Arabidopsis thaliana homolog: AT1G78800.1
Automatic updates:
Name: NM_001254450 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max alpha-1,3/1,6-mannosyltransferase ALG2-like (LOC100809168), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:17630480..17630776 (+ strand)
Length: 297
Type: five_prime_UTR
Position: Chr07:17630777..17630837 (+ strand)
Length: 61
Type: CDS
Position: Chr07:17631019..17631135 (+ strand)
Length: 117
Type: CDS
Position: Chr07:17631371..17631564 (+ strand)
Length: 194
Type: CDS
Position: Chr07:17631645..17631750 (+ strand)
Length: 106
Type: CDS
Position: Chr07:17631857..17632004 (+ strand)
Length: 148
Type: CDS
Position: Chr07:17632141..17632277 (+ strand)
Length: 137
Type: CDS
Position: Chr07:17636662..17636828 (+ strand)
Length: 167
Type: CDS
Position: Chr07:17636913..17637206 (+ strand)
Length: 294
Type: CDS
Position: Chr07:17637207..17637440 (+ strand)
Length: 234
Type: three_prime_UTR


>Vigan.07G143500.01
CTTTCCTTCG TACCATTTTA TTTCATTTTA TTTTGTTCTT TCCATTTTAT CAACCTAAAC ATTCTATCAC ATCACATCCT
ATTTTCTCCC TTTTCCCCAG TGACCAATAC CAAACAGACA CCTCAGTCAT GGTGACATTC TGCTGGTTGT TTCCAAACAA
TGACTTTTAC CCCGAATTCG TAAACAATCG AAACAAGGGT TAGAATTACT TGGCCTGTCG GATTAAGCCA TAACGCCACC
ACAGTCGCCG GCGAACTATT CCTGGGTTTG TTATCTTTTC GATCTTTACT TTCAAATATG GCAAAGGGAA CAAGCTCAAA
ACTGAACATC GCAATAATTC ACCCGGATCT TGGCATAGGT GGAGCTGAGA GATTGATTGT GGATGCTGCT GTTGAGCTTG
CATCCCAGGG CCATAAAGTT CATGTTTTTA CTGCACATCA TGACAAAAGT AGATGCTTTG AAGAAACTGT TGCCGGTACC
TTTCCAGTCA CTGTGTATGG TTCATTTCTT CCTCGTCATG TGTTCTACCG TCTTCATGCG TTGTGTGCAT ACCTTCGGTG
CCTATTTGTT GCTCTCTGTG TACTTTTCAT GTGGCATTCA TTTGATGTTG TACTGGCAGA TCAAGTCTCT GTAGTTATTC
CTATTTTCAA ACTCAAAAGG TCAATAAAGG TTGTATTCTA TTGTCATTTT CCGGACTTGT TACTGGCTCA ACATTCAACT
TTCATTAGGA GGATGTATAG AAAACCAATT GACTATGTAG AAGAGATAAC GACTGGAATG GCTGATTTGA TACTTGTTAA
CAGCAACTTC ACTGCCTCTA CGTTTGCAAA TACTTTTAAG TCTCTAGATG CTAAAGGAAT TCGACCAGCT GTTCTATATC
CAGCTGTCAA TGTGGATCAG TTCAAAGAAC CCAGTTCCTT TAAGCTGAAT TATCTTTCCA TCAATCGATT TGAAAGGAAG
AAGAACATAC AGTTAGCTAT TTCAGCTTTT GCTATGCTTC ACTCACCCGA AGGAAATGTT CAGCACAAAG ATATTACTAA
TGCTTCTTTG ACTATTGCTG GTGGCTTTGA TAAACGGTTG AAGGAGAATG TGGAGTACTT GGAAGAGCTT AAAGATTTAG
CAGAAAAGAA AGGAGTCTCG AGTAAAATAA GATTCGTCAC TTCTTGCCCT ACTGATGAAA GAAATGCACT TCTTTCAGAA
TGTTTATGTG TTCTTTACAC ACCAAAGGAT GAGCACTTTG GCATTGTTCC TCTGGAGGCA ATGGCAGCTT ATAAACCTGT
TATTGCATGC AACAGTGGTG GCCCTGTGGA GTCAATTAAG AATGGTGTAA CGGGATTCCT TTGTGATCCT ACACCTCAAG
AGTTTTGTTC AGCAATGGCT AAACTCATAA ATGATCCTCA GGGAGCAGAG AAAATGGGCA GAGAAGCTAG GAGGCATGTT
GTTGAGTCAT TCTCTACAAA GTCATTTGGC CAGCATCTAA ATAGATACCT TATTGACATT CATCGAGGAA AAGAGGATTG
AGTTTAACAT TGGATAGCAT GATTTTGCCC TTAAATTGTT AACTAAAATT GGTGACCATT CAACTTGCTG TTCAGATTTT
AGTTTGATTA GTTCACTTTC TGCAGAAATT GAATCACAGA GATGATGACA TGTTCAATAT TCTGCGGTTT GCACTGTTAT
AATTTTTACA GTATAAAGGT ACTCCAAAGT TTATAGAGAA TTTTCTTGTG CAAATATAAA AGATTCATTC ATTCA

>Vigan.07G143500.01
ATGGCAAAGG GAACAAGCTC AAAACTGAAC ATCGCAATAA TTCACCCGGA TCTTGGCATA GGTGGAGCTG AGAGATTGAT
TGTGGATGCT GCTGTTGAGC TTGCATCCCA GGGCCATAAA GTTCATGTTT TTACTGCACA TCATGACAAA AGTAGATGCT
TTGAAGAAAC TGTTGCCGGT ACCTTTCCAG TCACTGTGTA TGGTTCATTT CTTCCTCGTC ATGTGTTCTA CCGTCTTCAT
GCGTTGTGTG CATACCTTCG GTGCCTATTT GTTGCTCTCT GTGTACTTTT CATGTGGCAT TCATTTGATG TTGTACTGGC
AGATCAAGTC TCTGTAGTTA TTCCTATTTT CAAACTCAAA AGGTCAATAA AGGTTGTATT CTATTGTCAT TTTCCGGACT
TGTTACTGGC TCAACATTCA ACTTTCATTA GGAGGATGTA TAGAAAACCA ATTGACTATG TAGAAGAGAT AACGACTGGA
ATGGCTGATT TGATACTTGT TAACAGCAAC TTCACTGCCT CTACGTTTGC AAATACTTTT AAGTCTCTAG ATGCTAAAGG
AATTCGACCA GCTGTTCTAT ATCCAGCTGT CAATGTGGAT CAGTTCAAAG AACCCAGTTC CTTTAAGCTG AATTATCTTT
CCATCAATCG ATTTGAAAGG AAGAAGAACA TACAGTTAGC TATTTCAGCT TTTGCTATGC TTCACTCACC CGAAGGAAAT
GTTCAGCACA AAGATATTAC TAATGCTTCT TTGACTATTG CTGGTGGCTT TGATAAACGG TTGAAGGAGA ATGTGGAGTA
CTTGGAAGAG CTTAAAGATT TAGCAGAAAA GAAAGGAGTC TCGAGTAAAA TAAGATTCGT CACTTCTTGC CCTACTGATG
AAAGAAATGC ACTTCTTTCA GAATGTTTAT GTGTTCTTTA CACACCAAAG GATGAGCACT TTGGCATTGT TCCTCTGGAG
GCAATGGCAG CTTATAAACC TGTTATTGCA TGCAACAGTG GTGGCCCTGT GGAGTCAATT AAGAATGGTG TAACGGGATT
CCTTTGTGAT CCTACACCTC AAGAGTTTTG TTCAGCAATG GCTAAACTCA TAAATGATCC TCAGGGAGCA GAGAAAATGG
GCAGAGAAGC TAGGAGGCAT GTTGTTGAGT CATTCTCTAC AAAGTCATTT GGCCAGCATC TAAATAGATA CCTTATTGAC
ATTCATCGAG GAAAAGAGGA TTGA

>Vigan.07G143500.01
MAKGTSSKLN IAIIHPDLGI GGAERLIVDA AVELASQGHK VHVFTAHHDK SRCFEETVAG TFPVTVYGSF LPRHVFYRLH
ALCAYLRCLF VALCVLFMWH SFDVVLADQV SVVIPIFKLK RSIKVVFYCH FPDLLLAQHS TFIRRMYRKP IDYVEEITTG
MADLILVNSN FTASTFANTF KSLDAKGIRP AVLYPAVNVD QFKEPSSFKL NYLSINRFER KKNIQLAISA FAMLHSPEGN
VQHKDITNAS LTIAGGFDKR LKENVEYLEE LKDLAEKKGV SSKIRFVTSC PTDERNALLS ECLCVLYTPK DEHFGIVPLE
AMAAYKPVIA CNSGGPVESI KNGVTGFLCD PTPQEFCSAM AKLINDPQGA EKMGREARRH VVESFSTKSF GQHLNRYLID
IHRGKED*