VIGGS:GBrowse

Vigan.07G144200.01

Basic Information:

Name:	Vigan.07G144200.01 Multiple alignment Variant Information
Position:	Chr07:17771444..17774924 (- strand)
Length:	3481

Functional Information:

Description:	Similar to Uncharacterized protein. [I1M2Z5, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:12.38,35.04,71.55,36.44,87.03,139.50,80.19,80.04
Arabidopsis thaliana homolog:	AT1G16920.1

Automatic updates:

Name:	BT097430 NCBI(nuccore)
Organism:	Glycine max
Description:	Soybean clone JCVI-FLGm-16K15 unknown mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249030 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max GTP-binding protein (LOC547654), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001252726 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ras-related protein RABA1b-like (LOC100810759), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:17771444..17771740 (- strand)
Length:	297
Type:	three_prime_UTR

Position:	Chr07:17771741..17772173 (- strand)
Length:	433
Type:	CDS

Position:	Chr07:17774511..17774731 (- strand)
Length:	221
Type:	CDS

Position:	Chr07:17774732..17774924 (- strand)
Length:	193
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G144200.01
AAAACAAAGA CAAAAAAAAG AAAATAAGAA AATGATTTGA TGAGTGAGTG AGTGAGTGGC GCTTTTTTAA GCGTTTTCTT
TTCACATACT CTGCTTTTTC TTCTTCTCTT CTTTTCACTT CTCTCTTCTT TCCTTCGCTT CGCTTTTTAT TTTCCATTCA
CAGCACACAA GAGAACACGC AGCAGCACCA CCAATGGCGG GTTACAGAGC CGACGACGAC TACGACTACC TCTTCAAGGT
TGTCCTCATC GGCGACTCCG GCGTCGGCAA GTCCAACCTC CTTTCTCGTT TCACCAAGAA CGAGTTCAAC TTGGAGTCCA
AGTCCACCAT TGGGGTGGAG TTTGCCACTC GCACCTTGAA CGTCGATTCC AAAGTCATCA AGGCCCAGAT CTGGGACACC
GCTGGCCAAG AAAGGTATCG TGCGATCACC AGTGCATACT ACCGCGGCGC TGTGGGTGCA CTTCTGGTGT ACGATGTGAC
TCGGCATGCA ACGTTCGAGA ATGTTGACAG ATGGCTGAAA GAGCTGCGAA ACCACACAGA TGCTAACATT GTGGTGATGC
TTGTTGGAAA CAAATCAGAC CTTCGGCACC TGGTAGCAGT TACAACAGAA GATGGGAAGT CGTATGCTGA GAAAGAATCA
CTTTACTTCA TGGAAACCTC AGCTCTGGAG GCCACCAATG TAGAGAATGC ATTTGCTGAA GTTCTGACTC AAATCTACCG
CATTGTTAGC AAGAAAGCAG TAGAGGGTGC TGAGAATGGA ACTGCATCTG TGCCTGCAAA GGGGGAGAAA ATTGACCTCA
AAAATGATGT CTCTGCTTTG AAGAGAGTTG GATGCTGCTC AAGCTGAGGG AGGTTCTGAA GTTGGAAAAC ATAGCTGTTC
AATTGGTTGG TATCGGCTCT GTTGTACGTG TAATATTCTG AGAAATACGA ACTAGAAGAA AAGTCAAATT TAATGTCATA
GCTTGTTAGA CTATTTGTGT AACCTTAAAA AAACTAAGTT TGGTGTTTCA ATAGGAGCTG CTGGAGAAGA AAGTTGATTG
CTAGTCTTGT TGTAGTAGTG CTGTTATTAT TATTGTTTTT GAAATGTTTT CACATCCAAA GAGGTTCAAG CTTGGAATTA
ATTGAAGCTA TTGTTTCATT TAAA

[show][hide][copy]CDS

>Vigan.07G144200.01
ATGGCGGGTT ACAGAGCCGA CGACGACTAC GACTACCTCT TCAAGGTTGT CCTCATCGGC GACTCCGGCG TCGGCAAGTC
CAACCTCCTT TCTCGTTTCA CCAAGAACGA GTTCAACTTG GAGTCCAAGT CCACCATTGG GGTGGAGTTT GCCACTCGCA
CCTTGAACGT CGATTCCAAA GTCATCAAGG CCCAGATCTG GGACACCGCT GGCCAAGAAA GGTATCGTGC GATCACCAGT
GCATACTACC GCGGCGCTGT GGGTGCACTT CTGGTGTACG ATGTGACTCG GCATGCAACG TTCGAGAATG TTGACAGATG
GCTGAAAGAG CTGCGAAACC ACACAGATGC TAACATTGTG GTGATGCTTG TTGGAAACAA ATCAGACCTT CGGCACCTGG
TAGCAGTTAC AACAGAAGAT GGGAAGTCGT ATGCTGAGAA AGAATCACTT TACTTCATGG AAACCTCAGC TCTGGAGGCC
ACCAATGTAG AGAATGCATT TGCTGAAGTT CTGACTCAAA TCTACCGCAT TGTTAGCAAG AAAGCAGTAG AGGGTGCTGA
GAATGGAACT GCATCTGTGC CTGCAAAGGG GGAGAAAATT GACCTCAAAA ATGATGTCTC TGCTTTGAAG AGAGTTGGAT
GCTGCTCAAG CTGA

[show][hide][copy]PROTEIN

>Vigan.07G144200.01
MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLNVDSK VIKAQIWDTA GQERYRAITS
AYYRGAVGAL LVYDVTRHAT FENVDRWLKE LRNHTDANIV VMLVGNKSDL RHLVAVTTED GKSYAEKESL YFMETSALEA
TNVENAFAEV LTQIYRIVSK KAVEGAENGT ASVPAKGEKI DLKNDVSALK RVGCCSS*