GBrowse Details

Vigan.07G145400.01

Basic Information:
Name: Vigan.07G145400.01
Multiple alignment
Variant Information
Position: Chr07:18029561..18033021 (- strand)
Length: 3461
Functional Information:
Description: Similar to Uncharacterized protein. [I1LV79, Glycine max]
GO: Biological Process: protein transport (GO:0015031)
Cellular Component: membrane (GO:0016020)
InterPro: SecY/SEC61-alpha family (IPR002208)
Translocon Sec61/SecY, plug domain (IPR019561)
SecY subunit domain (IPR023201)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.37,19.09,43.89,29.49,58.60,125.19,61.30,44.08
Arabidopsis thaliana homolog: AT1G29310.1, AT1G78720.1, AT2G34250.1
Automatic updates:
Name: NM_001254197 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein transport protein Sec61 subunit alpha-like (LOC100798372), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:18029561..18029883 (- strand)
Length: 323
Type: three_prime_UTR
Position: Chr07:18029884..18030123 (- strand)
Length: 240
Type: CDS
Position: Chr07:18030651..18030786 (- strand)
Length: 136
Type: CDS
Position: Chr07:18030921..18031048 (- strand)
Length: 128
Type: CDS
Position: Chr07:18031128..18031482 (- strand)
Length: 355
Type: CDS
Position: Chr07:18031618..18031845 (- strand)
Length: 228
Type: CDS
Position: Chr07:18032048..18032391 (- strand)
Length: 344
Type: CDS
Position: Chr07:18032392..18033021 (- strand)
Length: 630
Type: five_prime_UTR


>Vigan.07G145400.01
CCGAGGTATT CCCCTTCAAT CTCTTCGATC TCCTTTTCAT GGTTTCGCAC ATTCCTAGAT CTGCATATTC TTCCACCCCG
CTTCTCAGCC CCGATTTGCT TCTCGCTTTT TGCACAAGCA AATTAGGGTT TCCGTTTCAT GAGATCTGAT CTAGATATAT
AGCATGCATT CGTATTGCGT AGGTCGCTGA ATTTTTTTGT TTGTTTTTAG GTTAAATGCA GGTGATGCAT AATTCTCGGC
AGCCTTGTAA TTGATGCATT GTTGCTTTGT TTATTATTTT TTCGAATGAG GTTTTGTTTA TGTGGTACTG TTTGATGCAT
GTAGCAATGT CCTTTTAGGA TCGGAAAGTT GAGCCAGTGC AAATTGATTT GGTTGTTCTA GTATGCTTTT GAGTAAACTG
GTGATTTTAG TTAGCATAGA TTGAAAAGGT GTTAATGTTG GCTTGCTTGT GTGAATGAAA AGTGTTTTTA ATTTATTATT
TTTTGTTGAT ATGGGCTTTG TTATTTGAAG AATTGCCACT TTGACGCTGA GACTTTTAGA AGTACAGAAC TTTTTGGGCC
CTTGCTGGTT ATCCTCTTAC AGATGCTTGT TGAATATTTT GTGCAGGCTA AACTGGTGTA GTGTGGTACG ATGGGAGGTG
GATTTAGGGT GCTTCACTTA GTTAGGCCGT TTCTATCGTT TCTTCCCGAG GTTCAAACTG CTGATAGGAA AGTGCCATTT
AGAGAAAAGG TCATATATAC TGTGATCTCT CTCTTCATTT TCCTGGTTTG TAGTCAACTT CCTCTATATG GGATTCACTC
AACAACAGGT GCGGATCCAT TCTATTGGAT GCGTGTTATT CTCGCTTCAA ACCGTGGAAC TGTCATGGAG CTTGGAATCA
CTCCCATTGT GACTTCTGGG CTGGTGATGC AACTTCTGGC TGGGTCGAAA ATTATTGAAG TCGACAACAA CGTACGGGAG
GATCGAGCAC TATTAAACGG AGCGCAGAAG CTTCTTGGTA TTTTGATAGC TGTTGGTGAG GCTGTTGCCT ATGTTCTTTC
AGGGATGTAT GGTAGTGTGG GACAACTTGG AGTAGGAAAT GCCATCCTCA TCATCATCCA GCTCTGTTTT GCGGGTATAA
TTGTGATTTG TCTAGACGAG CTTCTCCAAA AAGGATATGG TCTGGGGTCT GGAATTTCCC TATTCATAGC AACTAATATC
TGTGAAAACA TTATATGGAA GGCATTTAGC CCCACCACCA TTAATAGTGG ACGTGGAGCT GAATTTGAAG GTGCTGTTAT
TGCTCTGTTC CATTTGTTGA TAACTAGAAC AGACAAGGTC CGGGCTCTCC GGGAGGCATT TTACCGCCAG AATCTTCCGA
ATGTGACAAA TTTGCTTGCT ACTGTCTTGA TCTTCCTAAT TGTAATATAT TTCCAAGGTT TCCGTGTAGT CTTGCCTGTA
AGGTCAAAGA ATGCTCGTGG ACAGCAGGGT TCATATCCAA TCAAACTGTT TTATACCTCC AACATGCCCA TCATTCTTCA
GTCTGCTCTC GTTTCCAATC TCTACTTCAT CTCCCAGCTG CTCCATCGTA AGTACAGTGG AAACTTCTTT GTAGATCTAT
TGGGAAAATG GAAGGAATCT GAATATGGAG GTGGTCAGTC TGTACCTGTT GGAGGAATTG CGTACTATAT CACTGCACCA
TCCAGCTTAG CTGATATGGC AGCCAATCCC TTCCATGCTC TGTTCTATCT CGTGTTTATG CTTTCAGCCT GCGCCTTGTT
CTCTAAAACA TGGATTGAAG TCTCTGGTTC ATCTGCTAGA GATGTTGCCA AGCAGCTGAA GGAACAACAA ATGGTGATGC
CTGGACACCG TGAGTCAAAC TTGCAGAAAG AACTGAATCG ATACATTCCC ACTGCTGCAG CATTTGGAGG CATGTGTATC
GGTGCCTTGA CAGTGTTGGC AGATTTTATG GGCGCCATTG GTTCAGGAAC TGGAATATTG CTTGCAGTAA CGATCATCTA
TCAGTACTTT GAGACATTTG AGAAGGAGAG AGCGAGTGAG CTTGGCTTCT TTGGTTTCTA AGTTCTGCCA AGGGAATTAT
GTTGGTGACT TCTGAGTTTT CCCACACCCT TGTTCGAGGG TTCATATACT TCTTAGGACG GTTAACCTGC AAGGGAGGAG
ATATAGACTA GTTTATTATT ATTTTTTGTT TTTTTTTTTT GTATTTTTCT CCTGTTGTTA ACAATTTTGC ACTTCCTTGA
AATATACTTG TGTTTATCAT TGAATTTATG TTGAAGTCTG ACTCCAAGGT CGATCTCAAA TTTATCACCT TCGATATTGA
AAGTGGAAAT CGCCTAGTAT GATATTATAT GCCAAGCTGA TATTAATAGG TTTTTACTTC CCGC

>Vigan.07G145400.01
ATGGGAGGTG GATTTAGGGT GCTTCACTTA GTTAGGCCGT TTCTATCGTT TCTTCCCGAG GTTCAAACTG CTGATAGGAA
AGTGCCATTT AGAGAAAAGG TCATATATAC TGTGATCTCT CTCTTCATTT TCCTGGTTTG TAGTCAACTT CCTCTATATG
GGATTCACTC AACAACAGGT GCGGATCCAT TCTATTGGAT GCGTGTTATT CTCGCTTCAA ACCGTGGAAC TGTCATGGAG
CTTGGAATCA CTCCCATTGT GACTTCTGGG CTGGTGATGC AACTTCTGGC TGGGTCGAAA ATTATTGAAG TCGACAACAA
CGTACGGGAG GATCGAGCAC TATTAAACGG AGCGCAGAAG CTTCTTGGTA TTTTGATAGC TGTTGGTGAG GCTGTTGCCT
ATGTTCTTTC AGGGATGTAT GGTAGTGTGG GACAACTTGG AGTAGGAAAT GCCATCCTCA TCATCATCCA GCTCTGTTTT
GCGGGTATAA TTGTGATTTG TCTAGACGAG CTTCTCCAAA AAGGATATGG TCTGGGGTCT GGAATTTCCC TATTCATAGC
AACTAATATC TGTGAAAACA TTATATGGAA GGCATTTAGC CCCACCACCA TTAATAGTGG ACGTGGAGCT GAATTTGAAG
GTGCTGTTAT TGCTCTGTTC CATTTGTTGA TAACTAGAAC AGACAAGGTC CGGGCTCTCC GGGAGGCATT TTACCGCCAG
AATCTTCCGA ATGTGACAAA TTTGCTTGCT ACTGTCTTGA TCTTCCTAAT TGTAATATAT TTCCAAGGTT TCCGTGTAGT
CTTGCCTGTA AGGTCAAAGA ATGCTCGTGG ACAGCAGGGT TCATATCCAA TCAAACTGTT TTATACCTCC AACATGCCCA
TCATTCTTCA GTCTGCTCTC GTTTCCAATC TCTACTTCAT CTCCCAGCTG CTCCATCGTA AGTACAGTGG AAACTTCTTT
GTAGATCTAT TGGGAAAATG GAAGGAATCT GAATATGGAG GTGGTCAGTC TGTACCTGTT GGAGGAATTG CGTACTATAT
CACTGCACCA TCCAGCTTAG CTGATATGGC AGCCAATCCC TTCCATGCTC TGTTCTATCT CGTGTTTATG CTTTCAGCCT
GCGCCTTGTT CTCTAAAACA TGGATTGAAG TCTCTGGTTC ATCTGCTAGA GATGTTGCCA AGCAGCTGAA GGAACAACAA
ATGGTGATGC CTGGACACCG TGAGTCAAAC TTGCAGAAAG AACTGAATCG ATACATTCCC ACTGCTGCAG CATTTGGAGG
CATGTGTATC GGTGCCTTGA CAGTGTTGGC AGATTTTATG GGCGCCATTG GTTCAGGAAC TGGAATATTG CTTGCAGTAA
CGATCATCTA TCAGTACTTT GAGACATTTG AGAAGGAGAG AGCGAGTGAG CTTGGCTTCT TTGGTTTCTA A

>Vigan.07G145400.01
MGGGFRVLHL VRPFLSFLPE VQTADRKVPF REKVIYTVIS LFIFLVCSQL PLYGIHSTTG ADPFYWMRVI LASNRGTVME
LGITPIVTSG LVMQLLAGSK IIEVDNNVRE DRALLNGAQK LLGILIAVGE AVAYVLSGMY GSVGQLGVGN AILIIIQLCF
AGIIVICLDE LLQKGYGLGS GISLFIATNI CENIIWKAFS PTTINSGRGA EFEGAVIALF HLLITRTDKV RALREAFYRQ
NLPNVTNLLA TVLIFLIVIY FQGFRVVLPV RSKNARGQQG SYPIKLFYTS NMPIILQSAL VSNLYFISQL LHRKYSGNFF
VDLLGKWKES EYGGGQSVPV GGIAYYITAP SSLADMAANP FHALFYLVFM LSACALFSKT WIEVSGSSAR DVAKQLKEQQ
MVMPGHRESN LQKELNRYIP TAAAFGGMCI GALTVLADFM GAIGSGTGIL LAVTIIYQYF ETFEKERASE LGFFGF*