VIGGS:GBrowse

Vigan.07G149900.01

Basic Information:

Name:	Vigan.07G149900.01 Multiple alignment Variant Information
Position:	Chr07:19678768..19683253 (+ strand)
Length:	4486

Functional Information:

Description:	Similar to Uncharacterized protein. [V7BWY8, Phaseolus vulgaris]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:45.84,4.99,14.63,13.78,17.34,27.61,18.16,10.63
Arabidopsis thaliana homolog:	AT1G53400.1

Automatic updates:

Name:	NM_001251317 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ubiquitin-binding domain-containing protein (LOC100306399), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:19678768..19678996 (+ strand)
Length:	229
Type:	five_prime_UTR

Position:	Chr07:19678997..19679033 (+ strand)
Length:	37
Type:	CDS

Position:	Chr07:19680620..19680742 (+ strand)
Length:	123
Type:	CDS

Position:	Chr07:19682142..19682261 (+ strand)
Length:	120
Type:	CDS

Position:	Chr07:19682937..19683001 (+ strand)
Length:	65
Type:	CDS

Position:	Chr07:19683002..19683253 (+ strand)
Length:	252
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G149900.01
GGAAGGTAAG GTAGTAGAGT GTAGCCATTA CCGTTACCCA CTGCAGTGGT TATCGTGACA AAGCGACGTC ATTGACTTCT
CATCTCACTC ACAAGCAATC CCCTTCTTTT TCTTTCACCT CTTTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCCCT CTCTCTCTCT CCTTCTGCGA TGGGTTGTGC
TGGATCTTCA CAATCCAAGC CTGATGGTGC AGTAAAAAAG ATCCGGAAGC CTAAGCCATG GAAGCATCCT CAGCCAATAA
CGAAGACTCA GCTAACGCAA TTACGTGATG AGTTTTGGGA CACAGCTCCT CACTATGGTG GCCGGAAAGA GATTTGGGAT
GCTCTTCGAG CTGCTGCTGA GGCTGATCTA ACTTTAGCAC AAGCAATTGT GGATAGTGCT GGTGTAATTG TCCAAAGTTC
TGATTTGACA GTATGTTATG ATGAAAGAGG AGCAAAGTAT GAGCTGCCCA AGTACGTATT GAGTGAGCCA ACTAACCTGA
TTCGGGACAG TTAATAACAG AGTATAAATA GAAAGATTAA TGGGAAAGAG ATTGTAAATC TTGGTGTATA TGGTTATCTC
ATTGATTTGG TAACTTGCAT AGGGTAGCAA CTCTTTTTCC TTCCTGTTAT GTTTCCTCAA TCAATTAAAC AAAAAAAAAA
TGTTTGTTCT GTATCAGATG ATCGAATCCC TCTTCTTTGG TAAATACAAA CTCCATTTAT GTATTTCCGA AATATCTCAT
TCAACACGTC CATATATTTT TGTAAA

[show][hide][copy]CDS

>Vigan.07G149900.01
ATGGGTTGTG CTGGATCTTC ACAATCCAAG CCTGATGGTG CAGTAAAAAA GATCCGGAAG CCTAAGCCAT GGAAGCATCC
TCAGCCAATA ACGAAGACTC AGCTAACGCA ATTACGTGAT GAGTTTTGGG ACACAGCTCC TCACTATGGT GGCCGGAAAG
AGATTTGGGA TGCTCTTCGA GCTGCTGCTG AGGCTGATCT AACTTTAGCA CAAGCAATTG TGGATAGTGC TGGTGTAATT
GTCCAAAGTT CTGATTTGAC AGTATGTTAT GATGAAAGAG GAGCAAAGTA TGAGCTGCCC AAGTACGTAT TGAGTGAGCC
AACTAACCTG ATTCGGGACA GTTAA

[show][hide][copy]PROTEIN

>Vigan.07G149900.01
MGCAGSSQSK PDGAVKKIRK PKPWKHPQPI TKTQLTQLRD EFWDTAPHYG GRKEIWDALR AAAEADLTLA QAIVDSAGVI
VQSSDLTVCY DERGAKYELP KYVLSEPTNL IRDS*