GBrowse Details

Vigan.07G160800.01

Basic Information:
Name: Vigan.07G160800.01
Multiple alignment
Variant Information
Position: Chr07:22316198..22319505 (+ strand)
Length: 3308
Functional Information:
Description: Similar to uncharacterized LOC101215285, partial. [XP_004171424.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.89,2.82,27.68,262.57,4.09,61.78,10.01,48.99
Arabidopsis thaliana homolog: AT5G07020.1
Automatic updates:
Name: NM_001289206 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100803864 (LOC100803864), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:22316198..22316445 (+ strand)
Length: 248
Type: five_prime_UTR
Position: Chr07:22316446..22316616 (+ strand)
Length: 171
Type: CDS
Position: Chr07:22317973..22318110 (+ strand)
Length: 138
Type: CDS
Position: Chr07:22318851..22319213 (+ strand)
Length: 363
Type: CDS
Position: Chr07:22319214..22319505 (+ strand)
Length: 292
Type: three_prime_UTR


>Vigan.07G160800.01
ATTTTCCCAA CAACACAAGT ACTTTCCATG TGTCCACACA TGGCATATCC CAATCAAATT GTCTACCTTC AAGGCTTAAA
CACAACCACG AAACACCAAT CCTCAACACA CAAAATTCTC TCAGGTTTCA CCCACTAAAC CATAACTCCA AGATCCTCTT
CAAAATCCTA AATTTCTAAG AACCCTTTTG TTGTTTTTGT TTTTCTCGAG AGCATTTTGG TTTTGAACTT CAATTTCAGA
CCCAAATAAT GGCTTGTGCA TTTCATGCAA CTTTAGCAGC AAACAGCTGT GCCTTTTCTT CCAGGAGATT CTCCTTGAAG
CATCCAAAAA CCAGTAAGAG AAGGTTTGAT TTGTTCACTG TTAGAGCTGA CTCTGATGAT TCTGACTGCA ATGACGAAGA
ATGTGCCCCG GAAAAGGAAG TTGGAAAGGT CAGTGTGGAA TGGCTAGCCG GAGAGAAGAC AAAGGTAGTC GGTACTTTCC
CACCACGTCG AAAGCCGGGT TGGACCGGAT ATGTTGAGAA GGACACTGCT GGGCAGACAA ACATTTACTC TGTTGAGCCA
GCAGTTTATG TGGCAGAAAG TGCTATAAGT TCAGGAAGTG CTGGCTCTTC TTCTGATGGA GCTGAGAACA CTGCAGCAAT
TGTTGCAGGC CTTGCCCTGA TCTCAGTTGC TGCAGCATCC TCAATACTCT TACAAGTTGG TAAGAATGCT CCTCCTCAGA
TCCAGCCAAC TGAATACACA GGGCCATCAC TTACTTACTA CATCAACAAG TTCAAGCCAC CGGAGATTAC TGAAGTGTCC
GTGCGTAGTG AGGCAGAACC ACCGGCGGCC GTTCAACCAG ACTCAGCCAC CGATCTTTCC CAGGTTCAGG TCGAAGCTCA
AATCCAGCCA GAGACCTCGG ATGTGAACAT TCAATCATAG GTGTATCAGA TGGTTGCCAC TTTTGCTACA AAGACACATC
AAAGAATTTA TTTTTGTGTC AACAGTATGA GCCAGTGTAT ACATATATAA CTCTAAAGAT TAATGGATGC AAATGTTTCT
GTTAAACATC ATTCTTGGTA TGCTAGTGTT TCTTGTTTAT CCTTTGCTGT GTGTCACCAT GTTTATCAGA AAGACGTATG
AACAATGAAA TAGTATAATG TAAATATGAC CTTTCATATT AGTATTATTT TTTTGAAAGT TATCCATTTT AATAAAATTA
AGAAATAAAC AA

>Vigan.07G160800.01
ATGGCTTGTG CATTTCATGC AACTTTAGCA GCAAACAGCT GTGCCTTTTC TTCCAGGAGA TTCTCCTTGA AGCATCCAAA
AACCAGTAAG AGAAGGTTTG ATTTGTTCAC TGTTAGAGCT GACTCTGATG ATTCTGACTG CAATGACGAA GAATGTGCCC
CGGAAAAGGA AGTTGGAAAG GTCAGTGTGG AATGGCTAGC CGGAGAGAAG ACAAAGGTAG TCGGTACTTT CCCACCACGT
CGAAAGCCGG GTTGGACCGG ATATGTTGAG AAGGACACTG CTGGGCAGAC AAACATTTAC TCTGTTGAGC CAGCAGTTTA
TGTGGCAGAA AGTGCTATAA GTTCAGGAAG TGCTGGCTCT TCTTCTGATG GAGCTGAGAA CACTGCAGCA ATTGTTGCAG
GCCTTGCCCT GATCTCAGTT GCTGCAGCAT CCTCAATACT CTTACAAGTT GGTAAGAATG CTCCTCCTCA GATCCAGCCA
ACTGAATACA CAGGGCCATC ACTTACTTAC TACATCAACA AGTTCAAGCC ACCGGAGATT ACTGAAGTGT CCGTGCGTAG
TGAGGCAGAA CCACCGGCGG CCGTTCAACC AGACTCAGCC ACCGATCTTT CCCAGGTTCA GGTCGAAGCT CAAATCCAGC
CAGAGACCTC GGATGTGAAC ATTCAATCAT AG

>Vigan.07G160800.01
MACAFHATLA ANSCAFSSRR FSLKHPKTSK RRFDLFTVRA DSDDSDCNDE ECAPEKEVGK VSVEWLAGEK TKVVGTFPPR
RKPGWTGYVE KDTAGQTNIY SVEPAVYVAE SAISSGSAGS SSDGAENTAA IVAGLALISV AAASSILLQV GKNAPPQIQP
TEYTGPSLTY YINKFKPPEI TEVSVRSEAE PPAAVQPDSA TDLSQVQVEA QIQPETSDVN IQS*