GBrowse Details

Vigan.07G178900.01

Basic Information:
Name: Vigan.07G178900.01
Multiple alignment
Variant Information
Position: Chr07:24990244..25000463 (+ strand)
Length: 10220
Functional Information:
Description: Similar to nucleoid-associated protein Synpcc7942_0464-like isoform X1. [XP_004507747.1, Cicer arietinum]
InterPro: Nucleoid-associated protein YbaB (IPR004401)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:141.15,70.67,41.98,74.30,32.85,51.73,28.36,29.23
Arabidopsis thaliana homolog: AT2G24020.1
Automatic updates:
Name: NM_001249861 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305795 (LOC100305795), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:24990244..24990390 (+ strand)
Length: 147
Type: five_prime_UTR
Position: Chr07:24990391..24990481 (+ strand)
Length: 91
Type: CDS
Position: Chr07:24991046..24991200 (+ strand)
Length: 155
Type: CDS
Position: Chr07:24998552..24998652 (+ strand)
Length: 101
Type: CDS
Position: Chr07:24998728..24998767 (+ strand)
Length: 40
Type: CDS
Position: Chr07:24999263..24999334 (+ strand)
Length: 72
Type: CDS
Position: Chr07:24999948..25000004 (+ strand)
Length: 57
Type: CDS
Position: Chr07:25000092..25000166 (+ strand)
Length: 75
Type: CDS
Position: Chr07:25000167..25000463 (+ strand)
Length: 297
Type: three_prime_UTR


>Vigan.07G178900.01
TGGGACACAA CAAAATCATA ATCACCGCTG AACCTTGTTT CACTTTTATC CAATATCATA CCACACTTTC CATTTCAATC
TCATCCTTCT TCTCTGCACA CTTCAAAAAC CCAAATTCCA ACCTCTTCTT TCCTCCTCTG CAAGTCAATG GCAACCACGC
CTTCTCTCAC TGGTGCCTTG TCAAACTCTG TCGGACTCCG TGACTGGAGA AAGCATGCCC CTTTGTCAAC CTCTCTTTGT
AAACTAAGCT CCTGTTCAAA TATAGTTGAT TTAAAGATAA TATCTCGATG TGGTTGTCGG AAAGTTGGTC ATGGCCAAAG
AGGTTTCCAA TTATATGCTT TATTTGGAGG GAAGAAAGAC AATAATGGAA AAAGTGACGA TACTCCTTCT AAGGCAGGAA
TTCTTGGAAA CATGCAAAAT CTTTACGAGA CTGTGAAGAA GGCACAAATG GTTGTCCAAG TTGAAGCAGT GCGGGTGCAG
AAAGAACTTG CAGCAGCAGA GTTTGATGGT TATTGTGATG GTGAGTTAGT GAAGGTAACG CTGTCAGGGA ACCAGCAACC
TGTAAGAACC GAAATTACTG AGGCAGCTAT GGAATTGGGA CCTGAAAAAC TCTCCCTATT AATCACTGAG GCATACAAGG
ATGCACACCA GAAGAGTGTC CTGGCCATGA AGGAAAGGAT GAATGATCTT GCACAGAGCT TAGGAATGCC ACCGGGTCTT
AGTGAAGGAT TGAAGTGATG TATACTTTAA ATTCTAGACT TTCAACATTG CCTCAATTTT GCACAAACAT GTTCATTTAC
TATGGCCGTG AATTTGTACT CTTGCTTATT CAGAAAGAAA TGTAATCCTG GAATTATTTG AAATTTCTGT TTTTCACATT
TTACTCGCAT CATTTTTGCT GGAATGGTGA AATTTTCCTC AGTGTCCTGT TATCCTAGTC TTTATTCACA TAGAAAACCT
CTGCATGGTT ATTAGATTTG TTGTCTTGCT ATAGTACGAG AAACTGAGAC ATGAATGGAG TTCTGTAGAC ACAGG

>Vigan.07G178900.01
ATGGCAACCA CGCCTTCTCT CACTGGTGCC TTGTCAAACT CTGTCGGACT CCGTGACTGG AGAAAGCATG CCCCTTTGTC
AACCTCTCTT TGTAAACTAA GCTCCTGTTC AAATATAGTT GATTTAAAGA TAATATCTCG ATGTGGTTGT CGGAAAGTTG
GTCATGGCCA AAGAGGTTTC CAATTATATG CTTTATTTGG AGGGAAGAAA GACAATAATG GAAAAAGTGA CGATACTCCT
TCTAAGGCAG GAATTCTTGG AAACATGCAA AATCTTTACG AGACTGTGAA GAAGGCACAA ATGGTTGTCC AAGTTGAAGC
AGTGCGGGTG CAGAAAGAAC TTGCAGCAGC AGAGTTTGAT GGTTATTGTG ATGGTGAGTT AGTGAAGGTA ACGCTGTCAG
GGAACCAGCA ACCTGTAAGA ACCGAAATTA CTGAGGCAGC TATGGAATTG GGACCTGAAA AACTCTCCCT ATTAATCACT
GAGGCATACA AGGATGCACA CCAGAAGAGT GTCCTGGCCA TGAAGGAAAG GATGAATGAT CTTGCACAGA GCTTAGGAAT
GCCACCGGGT CTTAGTGAAG GATTGAAGTG A

>Vigan.07G178900.01
MATTPSLTGA LSNSVGLRDW RKHAPLSTSL CKLSSCSNIV DLKIISRCGC RKVGHGQRGF QLYALFGGKK DNNGKSDDTP
SKAGILGNMQ NLYETVKKAQ MVVQVEAVRV QKELAAAEFD GYCDGELVKV TLSGNQQPVR TEITEAAMEL GPEKLSLLIT
EAYKDAHQKS VLAMKERMND LAQSLGMPPG LSEGLK*