GBrowse Details

Vigan.07G186200.01

Basic Information:
Name: Vigan.07G186200.01
Multiple alignment
Variant Information
Position: Chr07:25701104..25704681 (- strand)
Length: 3578
Functional Information:
Description: Similar to uncharacterized protein. [C6T802, Glycine max]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:8.37,4.31,15.60,17.09,10.14,9.91,12.20,12.27
Arabidopsis thaliana homolog: AT1G33990.1, AT4G09900.1
Automatic updates:
Name: NM_001289331 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative methylesterase 12, chloroplastic-like (LOC100784567), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:25701104..25701389 (- strand)
Length: 286
Type: three_prime_UTR
Position: Chr07:25701390..25701662 (- strand)
Length: 273
Type: CDS
Position: Chr07:25702416..25702550 (- strand)
Length: 135
Type: CDS
Position: Chr07:25702871..25703014 (- strand)
Length: 144
Type: CDS
Position: Chr07:25703106..25703345 (- strand)
Length: 240
Type: CDS
Position: Chr07:25704150..25704386 (- strand)
Length: 237
Type: CDS
Position: Chr07:25704387..25704681 (- strand)
Length: 295
Type: five_prime_UTR


>Vigan.07G186200.01
AAAGGAATAG AAAGAGAAAT GAAACATGAA TTGAAAGTCT GGAGTCGTTG AAATCCAACG CAATTAATAA GCTCTAAAAT
CAGTTGGTTC CTTCCTTAGC ATATTTTTCC TTTTATATTT TTTGGCATTC ATACCCAACA ACTTAACAAC TCCTCCAACC
CTCCCTCACC ACGGAAAATA AAACAAAAAG ACAAGAGATA GCGATAAAGG GAGAAAATCA GGGACCATAG TAGGCAGAAA
AGAGGAAAAA CTTCGACTTT CTTTGTTTTC TGAAGAGCGG TGAAGAAAGT GAAAGATGGG TAACAGTTTT ATTTGCATGA
CTAAGAAGGA TTCGAAAGAT GTTGGATCGA GAAGCAAGAG AATGGGTAGA TCACAGAGGA AGCTTGTGAA CGAGGAAGAG
CTGCATCTTC AGGCACTGTC TATGGCACTT CAGCAGCATC AGTTGTCTCA GAGGTTTGAA GGGTCTATGT CTCGGAGAAT
TGGCTCCTCT AGAAGGCATG CTGTGTCTGA ATCTTTTTCA GCCAACAAGC AGGTTCCAAT AAATCTGGAG AACATTAAAA
TAAAAAAGTT TGTACTAATC CATGGAGAAG GTTTTGGGGC ATGGTGCTGG TACAAGACTG TTGCCTCTCT AGAAGAAGCA
GGGCTGCTCC CAGTTGCCTT AGATCTTACT GGCTCTGGAA TTGATCTCAC AGACACTAAC AGTGTCACTA CATTGGCTGA
TTATTCAAAA CCTTTGACTG TTTATCTCGA AAACCTTCCT GAGGATGAAA AGGTTATTCT TGTTGGTCAT AGTATTGGTG
GTGCATGCAT TTCTTATGCG TTGGAGCATT ATCCTCAGAA GATCTCAAAG GCAATTTTCC TTTGTGCTAC AATGGTATCT
GATGGTCAAA AACCTTTTGA TGTCTATGCT GAAGAGCTGG GATCTGCTGA ACGTTTTATT CAAGAATCAA AGTTTTTGAT
ACATGGGAAT GGTAAAGACA AACCCCCGAC AGGATTTATG TTTGAGAAGG AGCAGATGAA AGGGTTATAT TTTAACCAAT
CCCCAGCAAA GGATGTTGCT TTAGCCATGG TTTCCATGAG GCACAGCCCT CTTGGTCCAA TCATGGAGAA GCTGTCTTTA
TCTACTGACA AATATGGCAG CGGGCGCCGG TTTTACATTC AAACATTGGA TGATCGTGCA CTTTCACCAG ATGTCCAAGA
GAAGCTTGTG AGGGAAAATC CACCTGAAGG AGTTTTCAAG ATCAAAGGCA GTGATCACTG TCCATTCTTC TCCAAGCCGC
AATCTCTACA CAAAATTTTG GTGGAAATAG CTCAAATTCC ATAGCTTAAT GCACAACATA ATTTGTTCTA TCATTTCATC
TCTTAGGACC ACACAATTGT AGAGTTGATA TTGCTTTTTC TATATTGACC GTGAAACAGG AAGCCCAATT GGGAGAAGTA
TTTTTATTTT TTATAATCTT CAAATATAAC AGAGGAAGAA ACGTGATTTC ATCCCATTTA AGACAAAATA TTATTCAATC
AGTAAGTGAC CTCTGTAAGT TTTCTTTTTC ATGTGTATAG AAATATTTTC TAGTTCTCAT TCTGCTTTGA CAACTAATTT
TCATTGCGAG 

>Vigan.07G186200.01
ATGGGTAACA GTTTTATTTG CATGACTAAG AAGGATTCGA AAGATGTTGG ATCGAGAAGC AAGAGAATGG GTAGATCACA
GAGGAAGCTT GTGAACGAGG AAGAGCTGCA TCTTCAGGCA CTGTCTATGG CACTTCAGCA GCATCAGTTG TCTCAGAGGT
TTGAAGGGTC TATGTCTCGG AGAATTGGCT CCTCTAGAAG GCATGCTGTG TCTGAATCTT TTTCAGCCAA CAAGCAGGTT
CCAATAAATC TGGAGAACAT TAAAATAAAA AAGTTTGTAC TAATCCATGG AGAAGGTTTT GGGGCATGGT GCTGGTACAA
GACTGTTGCC TCTCTAGAAG AAGCAGGGCT GCTCCCAGTT GCCTTAGATC TTACTGGCTC TGGAATTGAT CTCACAGACA
CTAACAGTGT CACTACATTG GCTGATTATT CAAAACCTTT GACTGTTTAT CTCGAAAACC TTCCTGAGGA TGAAAAGGTT
ATTCTTGTTG GTCATAGTAT TGGTGGTGCA TGCATTTCTT ATGCGTTGGA GCATTATCCT CAGAAGATCT CAAAGGCAAT
TTTCCTTTGT GCTACAATGG TATCTGATGG TCAAAAACCT TTTGATGTCT ATGCTGAAGA GCTGGGATCT GCTGAACGTT
TTATTCAAGA ATCAAAGTTT TTGATACATG GGAATGGTAA AGACAAACCC CCGACAGGAT TTATGTTTGA GAAGGAGCAG
ATGAAAGGGT TATATTTTAA CCAATCCCCA GCAAAGGATG TTGCTTTAGC CATGGTTTCC ATGAGGCACA GCCCTCTTGG
TCCAATCATG GAGAAGCTGT CTTTATCTAC TGACAAATAT GGCAGCGGGC GCCGGTTTTA CATTCAAACA TTGGATGATC
GTGCACTTTC ACCAGATGTC CAAGAGAAGC TTGTGAGGGA AAATCCACCT GAAGGAGTTT TCAAGATCAA AGGCAGTGAT
CACTGTCCAT TCTTCTCCAA GCCGCAATCT CTACACAAAA TTTTGGTGGA AATAGCTCAA ATTCCATAG

>Vigan.07G186200.01
MGNSFICMTK KDSKDVGSRS KRMGRSQRKL VNEEELHLQA LSMALQQHQL SQRFEGSMSR RIGSSRRHAV SESFSANKQV
PINLENIKIK KFVLIHGEGF GAWCWYKTVA SLEEAGLLPV ALDLTGSGID LTDTNSVTTL ADYSKPLTVY LENLPEDEKV
ILVGHSIGGA CISYALEHYP QKISKAIFLC ATMVSDGQKP FDVYAEELGS AERFIQESKF LIHGNGKDKP PTGFMFEKEQ
MKGLYFNQSP AKDVALAMVS MRHSPLGPIM EKLSLSTDKY GSGRRFYIQT LDDRALSPDV QEKLVRENPP EGVFKIKGSD
HCPFFSKPQS LHKILVEIAQ IP*