GBrowse Details

Vigan.07G187600.01

Basic Information:
Name: Vigan.07G187600.01
Multiple alignment
Variant Information
Position: Chr07:25940018..25946814 (+ strand)
Length: 6797
Functional Information:
Description: Similar to Uncharacterized protein. [K7LPX9, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Cellular Component: nucleus (GO:0005634)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: protein dimerization activity (GO:0046983)
InterPro: Transcription factor, MADS-box (IPR002100)
Transcription factor, K-box (IPR002487)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.14,0.51,0.24,0.00,0.00,3.93,0.08,0.02
Arabidopsis thaliana homolog: AT5G13790.1
Structure :
Position: Chr07:25940018..25940343 (+ strand)
Length: 326
Type: five_prime_UTR
Position: Chr07:25940344..25940525 (+ strand)
Length: 182
Type: CDS
Position: Chr07:25942849..25942927 (+ strand)
Length: 79
Type: CDS
Position: Chr07:25944649..25944713 (+ strand)
Length: 65
Type: CDS
Position: Chr07:25944811..25944910 (+ strand)
Length: 100
Type: CDS
Position: Chr07:25945045..25945086 (+ strand)
Length: 42
Type: CDS
Position: Chr07:25945797..25945838 (+ strand)
Length: 42
Type: CDS
Position: Chr07:25945937..25946103 (+ strand)
Length: 167
Type: CDS
Position: Chr07:25946619..25946673 (+ strand)
Length: 55
Type: CDS
Position: Chr07:25946674..25946814 (+ strand)
Length: 141
Type: three_prime_UTR


>Vigan.07G187600.01
GAGTAAGTGA AATGTTAAGA AAAAGAAAAA AAAATAGAAA TGGGACCCAC AACAGGTGCA GAGGAAAATC CAAAACAGGG
CAAAAAGGAA ACAGAAACAG TCTCTAAATG CACAGAGAAC AACACGGAGC CATGCAAAGT TGCCGTTTCC AGCAAGGCCA
ACCTCTCTGT TCAGTCGTTT GAGGTAAAAC GCTTTTCAGT GTCTTCACGA AGCCACCTTT TCTTCTTCTC TTCTCCTCTC
TTCGACCAAC TCAACAGGGT CTTTTTCTTT TCAACCTCAA ACTCTGTCTT TATAATCTCT GCTCGAGTTT GAGTTGGGCA
TGTCCAATGG GTCGAGGGAA GATCGAGATC AAAAGAATCG ACAATGCCAG CAGCAGGCAA GTCACCTTCT CCAAGCGCAG
AACAGGCTTG TTCAAAAAGG CTCAAGAACT CTCCATTCTC TGTGACTCCG AGGTTGCCGT CATAGTTTTT TCCAACACTG
GCAAGCTCTT TGAGTTTTCC AGTTCAGGAA TGATGCGAAC ACTTTCAAGA TACAACAAAT GTCTTGGTTC TACGGATGTT
ACTGCTGTAG CAGAAATTAA AACACAGAAG GAAGATTCTA AGATGGTGGA CATTCTAAGA GAAGAAATTT CAAAGTTAGA
ATCAAAGCAA TTACAGTTAT TGGGTAAGGA TCTGACAGGA TTGGGAATAA AAGAATTGCA AAATATAGAG CAGCAACTCA
GTGAGGGGTT ATTGTCTGTA AAGGCAAAAA AGGAGGAATT ACTTATGGAG CAGCTGGAGC AATCTAGAGT TCAGGAACAG
CGGGTCATGT TGGAGAATGA AACTTTGCGC AGACAGATTG AGGAGCTTCG CTGTCTGTTT CCACAAACAG AAACAATGGT
TCCATTTCAG TATCAACGTC CTGAAAGAAA GAACACTTTT GTAAATACCG GTGCCAGATG TCTCAACTTG GCCAATAACT
GTGGAAATGA GAAAGGAAGT TCAGACACAG TATTTCATTT GGGGTTGCCT GCTGGTGTTC AAGAGGAAGG GCCCCAAGAA
AGAAATCTTT TCAAATAACT TTTCAGAGTT CTGATTTTCT TATTTCAACA GGGAAAATAG AATTTCAGAC ATTTATTGCA
GTTGTAGTTA TGTACAATAT AGATTAGGGA GAAAGGTTAT GACTAAAAGT GACCCTCAAG TTATAAATTG GAATTTGGC

>Vigan.07G187600.01
ATGGGTCGAG GGAAGATCGA GATCAAAAGA ATCGACAATG CCAGCAGCAG GCAAGTCACC TTCTCCAAGC GCAGAACAGG
CTTGTTCAAA AAGGCTCAAG AACTCTCCAT TCTCTGTGAC TCCGAGGTTG CCGTCATAGT TTTTTCCAAC ACTGGCAAGC
TCTTTGAGTT TTCCAGTTCA GGAATGATGC GAACACTTTC AAGATACAAC AAATGTCTTG GTTCTACGGA TGTTACTGCT
GTAGCAGAAA TTAAAACACA GAAGGAAGAT TCTAAGATGG TGGACATTCT AAGAGAAGAA ATTTCAAAGT TAGAATCAAA
GCAATTACAG TTATTGGGTA AGGATCTGAC AGGATTGGGA ATAAAAGAAT TGCAAAATAT AGAGCAGCAA CTCAGTGAGG
GGTTATTGTC TGTAAAGGCA AAAAAGGAGG AATTACTTAT GGAGCAGCTG GAGCAATCTA GAGTTCAGGA ACAGCGGGTC
ATGTTGGAGA ATGAAACTTT GCGCAGACAG ATTGAGGAGC TTCGCTGTCT GTTTCCACAA ACAGAAACAA TGGTTCCATT
TCAGTATCAA CGTCCTGAAA GAAAGAACAC TTTTGTAAAT ACCGGTGCCA GATGTCTCAA CTTGGCCAAT AACTGTGGAA
ATGAGAAAGG AAGTTCAGAC ACAGTATTTC ATTTGGGGTT GCCTGCTGGT GTTCAAGAGG AAGGGCCCCA AGAAAGAAAT
CTTTTCAAAT AA

>Vigan.07G187600.01
MGRGKIEIKR IDNASSRQVT FSKRRTGLFK KAQELSILCD SEVAVIVFSN TGKLFEFSSS GMMRTLSRYN KCLGSTDVTA
VAEIKTQKED SKMVDILREE ISKLESKQLQ LLGKDLTGLG IKELQNIEQQ LSEGLLSVKA KKEELLMEQL EQSRVQEQRV
MLENETLRRQ IEELRCLFPQ TETMVPFQYQ RPERKNTFVN TGARCLNLAN NCGNEKGSSD TVFHLGLPAG VQEEGPQERN
LFK*