GBrowse Details

Vigan.07G188700.01

Basic Information:
Name: Vigan.07G188700.01
Multiple alignment
Variant Information
Position: Chr07:26114618..26124718 (- strand)
Length: 10101
Functional Information:
Description: Similar to tRNA (cytidine(34)-2'-O)-methyltransferase-like. [XP_004513802.1, Cicer arietinum]
GO: Biological Process: RNA methylation (GO:0001510)
Biological Process: RNA processing (GO:0006396)
Molecular Function: RNA binding (GO:0003723)
Molecular Function: methyltransferase activity (GO:0008168)
Molecular Function: RNA methyltransferase activity (GO:0008173)
InterPro: tRNA/rRNA methyltransferase, SpoU (IPR001537)
tRNA (cytidine/uridine-2'-O-)-methyltransferase (IPR016914)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:3.07,8.73,6.32,9.16,6.92,4.79,7.02,4.90
Arabidopsis thaliana homolog: AT5G26880.1
Automatic updates:
Name: NM_001252968 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative tRNA (cytidine(34)-2'-O)-methyltransferase-like (LOC100813874), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:26114618..26114920 (- strand)
Length: 303
Type: three_prime_UTR
Position: Chr07:26114921..26115205 (- strand)
Length: 285
Type: CDS
Position: Chr07:26121643..26121696 (- strand)
Length: 54
Type: CDS
Position: Chr07:26121777..26121837 (- strand)
Length: 61
Type: CDS
Position: Chr07:26122159..26122217 (- strand)
Length: 59
Type: CDS
Position: Chr07:26122318..26122386 (- strand)
Length: 69
Type: CDS
Position: Chr07:26124300..26124412 (- strand)
Length: 113
Type: CDS
Position: Chr07:26124504..26124654 (- strand)
Length: 151
Type: CDS
Position: Chr07:26124655..26124718 (- strand)
Length: 64
Type: five_prime_UTR


>Vigan.07G188700.01
CATTTGATTT CGAATGCTTA GTCTCCAACG GATAGAGGAG AAAGAAGAAA AGGGGAAGTG AAGAATGGAA ATCACTGCCC
TAAAATCCCT TAACATTCCA ACCCCATTTC ACTTTCCATC ATCTAAATTC TCTCCCTTTT GTCAATTCAC TTTCTTTCAC
TTCAAACCTT TTCTCACTTC TTCCTCATGT CGCTTCTCCC CCCATTGCTC TCTCAATGGG TCAACTAAGA TCGTAACCAA
GGAAGGTGCT TTGCCTCGCG GCGTTGGAGA GGCTGTCAGT GAAGCATCAT GTTCCAAGTT TCTTCAGGTT GTGCTCGTGT
CACCTCAGAT TCCAGGAAAC ACAGGGTGCA TTGCTAGAAC ATGTGCAGCA TCAAATGTTG GATTACACTT AGTTGGGCCA
TTAGGATTTC AGGTGGATGA TACTAAGCTA AAGCGAGCTG GATTGGATTA CTGGCCATAT GTGGTTGTTA AGGTTCATGA
TTCTTGGGCA GATTTTCGTG ATTATTTTAG GCAACAGGAG GGTGAAAAGC GGTTGCTAGC TTTTACAAAG AGGGGAACTC
AAATTCATTC TGAGTTTTCC TACAGAAAAG GTGACTATCT TTTGTTTGGT TCTGAAACAA GTGGCCTGCC TCCTGAAGCC
TTGTTAGACT GCAAAACTGA ACCATTTGGT GGAGGGACTA TCAAAATCCC CATGGTTGAG ACTTATGTCA GATGTTTGAA
TCTGTCTGTA AGTGTTGGCA TAGCTTTGTA TGAAGCTTCC AGACAACTAA ACTACGAGTC ACTTCAGGTA CCTTCAGAAA
GCCATATTGA TACTACTGTG GAAGAATCAT TTATTGCTGA AGACATTTTT GCTTGAATAT CATAAATATT TTATTCTACA
CAAGGGGGTT GGTACCATTT TGCTGGTTAA TTGAGATGGA AAATGTCTGT TTCACTCTGA ATTAGTTACT CCCAAATCTG
CACCCAATTC CATAAATACA ACTCACTTAC ATGTGCCACT AGATTTTGTG GAGATTATGT ATCAAAATTT TGTACCAATC
CACATGTAAT ATCATTGTAA TCTAATTAGT TGTGCCACTT ATTGTGGAGG ATTAGTTTAA CATTTTCATT CAATCTGTGG
AATATTGAAA AGAGGAAGGA TAAAGAATCA CATTTTTAC

>Vigan.07G188700.01
ATGGAAATCA CTGCCCTAAA ATCCCTTAAC ATTCCAACCC CATTTCACTT TCCATCATCT AAATTCTCTC CCTTTTGTCA
ATTCACTTTC TTTCACTTCA AACCTTTTCT CACTTCTTCC TCATGTCGCT TCTCCCCCCA TTGCTCTCTC AATGGGTCAA
CTAAGATCGT AACCAAGGAA GGTGCTTTGC CTCGCGGCGT TGGAGAGGCT GTCAGTGAAG CATCATGTTC CAAGTTTCTT
CAGGTTGTGC TCGTGTCACC TCAGATTCCA GGAAACACAG GGTGCATTGC TAGAACATGT GCAGCATCAA ATGTTGGATT
ACACTTAGTT GGGCCATTAG GATTTCAGGT GGATGATACT AAGCTAAAGC GAGCTGGATT GGATTACTGG CCATATGTGG
TTGTTAAGGT TCATGATTCT TGGGCAGATT TTCGTGATTA TTTTAGGCAA CAGGAGGGTG AAAAGCGGTT GCTAGCTTTT
ACAAAGAGGG GAACTCAAAT TCATTCTGAG TTTTCCTACA GAAAAGGTGA CTATCTTTTG TTTGGTTCTG AAACAAGTGG
CCTGCCTCCT GAAGCCTTGT TAGACTGCAA AACTGAACCA TTTGGTGGAG GGACTATCAA AATCCCCATG GTTGAGACTT
ATGTCAGATG TTTGAATCTG TCTGTAAGTG TTGGCATAGC TTTGTATGAA GCTTCCAGAC AACTAAACTA CGAGTCACTT
CAGGTACCTT CAGAAAGCCA TATTGATACT ACTGTGGAAG AATCATTTAT TGCTGAAGAC ATTTTTGCTT GA

>Vigan.07G188700.01
MEITALKSLN IPTPFHFPSS KFSPFCQFTF FHFKPFLTSS SCRFSPHCSL NGSTKIVTKE GALPRGVGEA VSEASCSKFL
QVVLVSPQIP GNTGCIARTC AASNVGLHLV GPLGFQVDDT KLKRAGLDYW PYVVVKVHDS WADFRDYFRQ QEGEKRLLAF
TKRGTQIHSE FSYRKGDYLL FGSETSGLPP EALLDCKTEP FGGGTIKIPM VETYVRCLNL SVSVGIALYE ASRQLNYESL
QVPSESHIDT TVEESFIAED IFA*