GBrowse Details

Vigan.07G188800.01

Basic Information:
Name: Vigan.07G188800.01
Multiple alignment
Variant Information
Position: Chr07:26144437..26150245 (+ strand)
Length: 5809
Functional Information:
Description: Similar to SURP and G-patch domain-containing protein 1-like protein-like isoform X3. [XP_006585346.1, Glycine max]
GO: Biological Process: RNA processing (GO:0006396)
Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: RNA binding (GO:0003723)
InterPro: SWAP/Surp (IPR000061)
G-patch domain (IPR000467)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:162.19,118.72,57.72,74.14,51.15,29.10,60.48,58.60
Arabidopsis thaliana homolog: AT3G52120.1
Automatic updates:
Name: BT099051 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-26F12 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:26144437..26144531 (+ strand)
Length: 95
Type: five_prime_UTR
Position: Chr07:26145652..26145693 (+ strand)
Length: 42
Type: five_prime_UTR
Position: Chr07:26145694..26146096 (+ strand)
Length: 403
Type: CDS
Position: Chr07:26147627..26147753 (+ strand)
Length: 127
Type: CDS
Position: Chr07:26147848..26147954 (+ strand)
Length: 107
Type: CDS
Position: Chr07:26148525..26148683 (+ strand)
Length: 159
Type: CDS
Position: Chr07:26148944..26149078 (+ strand)
Length: 135
Type: CDS
Position: Chr07:26149208..26149381 (+ strand)
Length: 174
Type: CDS
Position: Chr07:26149734..26149912 (+ strand)
Length: 179
Type: CDS
Position: Chr07:26150031..26150057 (+ strand)
Length: 27
Type: CDS
Position: Chr07:26150058..26150245 (+ strand)
Length: 188
Type: three_prime_UTR


>Vigan.07G188800.01
CAACTATCTA TTTCGCTAGG TTTGTACAGC GTTTGGGGCG AAAAGTTCAG CCTTTTCCGA TTTGCATCAA ATTCAACACA
CAGCACCATC GTTTGTGGAC TGGGTTGCTG TAAACTGCAT TGTTTGGCTG TTAGCTAATG GATAAGGGGG TGCCACCTAG
CCTATTCGTC AATGATGGTT CTTTCATGGA GAGGTTCAAG CAACTTCAAC AAGAGCAGGA GAAAGGGAAG AATGTCAAAT
TAGAGAATTC TAAACCAATT AAGGTTATTT CAGGGTCTTT GTCGCCCAAT CCCTCCATTA CCAAAACATC TGTGGACTCG
AAGGTTAATG ATACTAGGAA AACATCCCAG GGTGGTTCTG GTGGCAAACT AGCTTTCAGT TTAAAACAAA AGTCAAAGCT
GGTACCACCC CCTGTTAAAT TGAGTGCCGA TGAAGATGAA GAAGAAACAG AAGCTGGGTA TATTTCAAAT GATGCACCAC
TAAAACGACA AAAGTTAGGC CAGGATGGCA TTGACCAATC ATCAAGACAA CTTGATGTTG CACCTCCTTC CCCAAGTGAT
CCTACAGTGA AGAAAGTTGC TGACAAACTA GCAAGTTTTG TGGCAAAAAA TGGAAGGCAA TTTGAGGATG TTACGCGTCA
AAAAAATCCA GGGGATACAC CTTTCAAATT TTTATTTGAT GAAAGATGTG CTGAATACAA GTACTATGAA TATCAGCTGG
CTCAAGAAGA AAAGGCTCTT GCACAGACAA GGGAATCACA GGTGCCTCGT AATGGGGGAA CAAGTACTTC ATCTTCCAAA
CCCACTAGTG GTCATCAAAG ATCATCTCAG CAGCTTACAT CCTACCAAAT TCCTGCATCT GCTTTATATG AAAGTGCGGA
CAATTCAAGA GCTTCTGGAT CTTCAATTCA AACATCTCCA CTAGGAATGA GTGAAGAGCC CAGTGGTTCA TCAAATGCTG
ATTCTTTGGC ACTAATGGAG TTCTACATGA AGAAAGCTGC ACGGGAAGAA AAGTATAAAC AACCTAAGTA TTCAAAAGAT
GAGATGCCCC CTCCTGCCTC TCTTCAAGGC AAAAAAGGCC ATCACATGGG TGATTTCATA CCTCCAGAAG AACTTGAGAA
GTTCTTGGCC AGTTGTAATG ATGCTGCAGC ACAGAAAGCT GCAAAGGAGC ATGTAGAGAG GTCTAAGATT CAGGCTGATA
ATGTAGGCCA CAGGCTCCTG TCAAAAATGG GTTGGAAAGA AGGTGAGGGT CTGGGCGGAT CCAGGAAGGG TATTTCAGAT
CCTATCATGG CAGGTAATAT TAAGAAGAAT AACTTGGGGG TTGGTGCTCA GGAACCAGGG GAGGTGACTT CAGAGGATGA
CATATATGAG CAGTACAAGA AGCGGATGAT GCTTGGTTAT CGTTACAGAC CCAATCCTCT GAACAATCCT CGAAAAGCTT
ATTACTGAAC TTGACAAAGG ATTTGCAAGT CTTTTCCTTG TGTTGGATGA ATTGATTTAG GGTTTTCGTA TTGTGTGTTG
TAGTGCTTGT AAGACTTGGG GAGAAAAGAG GAGGAAGGGT TTAATGTTCG ATACAATCAT ATCTTTACCC GTCAAAAAAT
AATGGTTTCT TGTTATTTTC GATACAATCA TGTTTG

>Vigan.07G188800.01
ATGGATAAGG GGGTGCCACC TAGCCTATTC GTCAATGATG GTTCTTTCAT GGAGAGGTTC AAGCAACTTC AACAAGAGCA
GGAGAAAGGG AAGAATGTCA AATTAGAGAA TTCTAAACCA ATTAAGGTTA TTTCAGGGTC TTTGTCGCCC AATCCCTCCA
TTACCAAAAC ATCTGTGGAC TCGAAGGTTA ATGATACTAG GAAAACATCC CAGGGTGGTT CTGGTGGCAA ACTAGCTTTC
AGTTTAAAAC AAAAGTCAAA GCTGGTACCA CCCCCTGTTA AATTGAGTGC CGATGAAGAT GAAGAAGAAA CAGAAGCTGG
GTATATTTCA AATGATGCAC CACTAAAACG ACAAAAGTTA GGCCAGGATG GCATTGACCA ATCATCAAGA CAACTTGATG
TTGCACCTCC TTCCCCAAGT GATCCTACAG TGAAGAAAGT TGCTGACAAA CTAGCAAGTT TTGTGGCAAA AAATGGAAGG
CAATTTGAGG ATGTTACGCG TCAAAAAAAT CCAGGGGATA CACCTTTCAA ATTTTTATTT GATGAAAGAT GTGCTGAATA
CAAGTACTAT GAATATCAGC TGGCTCAAGA AGAAAAGGCT CTTGCACAGA CAAGGGAATC ACAGGTGCCT CGTAATGGGG
GAACAAGTAC TTCATCTTCC AAACCCACTA GTGGTCATCA AAGATCATCT CAGCAGCTTA CATCCTACCA AATTCCTGCA
TCTGCTTTAT ATGAAAGTGC GGACAATTCA AGAGCTTCTG GATCTTCAAT TCAAACATCT CCACTAGGAA TGAGTGAAGA
GCCCAGTGGT TCATCAAATG CTGATTCTTT GGCACTAATG GAGTTCTACA TGAAGAAAGC TGCACGGGAA GAAAAGTATA
AACAACCTAA GTATTCAAAA GATGAGATGC CCCCTCCTGC CTCTCTTCAA GGCAAAAAAG GCCATCACAT GGGTGATTTC
ATACCTCCAG AAGAACTTGA GAAGTTCTTG GCCAGTTGTA ATGATGCTGC AGCACAGAAA GCTGCAAAGG AGCATGTAGA
GAGGTCTAAG ATTCAGGCTG ATAATGTAGG CCACAGGCTC CTGTCAAAAA TGGGTTGGAA AGAAGGTGAG GGTCTGGGCG
GATCCAGGAA GGGTATTTCA GATCCTATCA TGGCAGGTAA TATTAAGAAG AATAACTTGG GGGTTGGTGC TCAGGAACCA
GGGGAGGTGA CTTCAGAGGA TGACATATAT GAGCAGTACA AGAAGCGGAT GATGCTTGGT TATCGTTACA GACCCAATCC
TCTGAACAAT CCTCGAAAAG CTTATTACTG A

>Vigan.07G188800.01
MDKGVPPSLF VNDGSFMERF KQLQQEQEKG KNVKLENSKP IKVISGSLSP NPSITKTSVD SKVNDTRKTS QGGSGGKLAF
SLKQKSKLVP PPVKLSADED EEETEAGYIS NDAPLKRQKL GQDGIDQSSR QLDVAPPSPS DPTVKKVADK LASFVAKNGR
QFEDVTRQKN PGDTPFKFLF DERCAEYKYY EYQLAQEEKA LAQTRESQVP RNGGTSTSSS KPTSGHQRSS QQLTSYQIPA
SALYESADNS RASGSSIQTS PLGMSEEPSG SSNADSLALM EFYMKKAARE EKYKQPKYSK DEMPPPASLQ GKKGHHMGDF
IPPEELEKFL ASCNDAAAQK AAKEHVERSK IQADNVGHRL LSKMGWKEGE GLGGSRKGIS DPIMAGNIKK NNLGVGAQEP
GEVTSEDDIY EQYKKRMMLG YRYRPNPLNN PRKAYY*