GBrowse Details

Vigan.07G190000.01

Basic Information:
Name: Vigan.07G190000.01
Multiple alignment
Variant Information
Position: Chr07:26317594..26319670 (- strand)
Length: 2077
Functional Information:
Description: Similar to 60S ribosomal protein L6-3-like isoform X2. [XP_004504017.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: 60S ribosomal protein L6E (IPR000915)
Ribosomal protein L6, N-terminal (IPR005568)
Translation protein SH3-like domain (IPR008991)
Ribosomal protein L2 domain 2 (IPR014722)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:176.86,266.79,212.27,126.26,368.56,543.49,182.75,120.89
Arabidopsis thaliana homolog: AT1G74060.1
Automatic updates:
Name: NM_001248794 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499766 (LOC100499766), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255451 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 60S ribosomal protein L6-like (LOC100809343), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:26317594..26317955 (- strand)
Length: 362
Type: three_prime_UTR
Position: Chr07:26317956..26318111 (- strand)
Length: 156
Type: CDS
Position: Chr07:26318205..26318386 (- strand)
Length: 182
Type: CDS
Position: Chr07:26318635..26318741 (- strand)
Length: 107
Type: CDS
Position: Chr07:26319264..26319517 (- strand)
Length: 254
Type: CDS
Position: Chr07:26319518..26319670 (- strand)
Length: 153
Type: five_prime_UTR


>Vigan.07G190000.01
AAAAAAGCCC AAACCTCCTA GGGTTAAGTT TAGAGAGCCC AACCCATTAG ACGGAAACGG TGCGTTTGAG GCGCATATAT
AATAGACTAA GTATTAGGGT TTTGCAACAC GAGCCTCATC AGAAGCGGAA GAAGCAGAAG GAAAGGAAGA GCAATGGCGC
CGAAGAAGCC GAGAAGCGTG TCAAGGAACC CTGAACTCAT TAGGGGTATT GGGAAGTACT CAAGGTCCCA GATGTACCAC
AAGAGGGGCA TCTGGGCCAT CAAGGCCAAA CACGGCGGCG TTTTCCCTCG CCACGACCCT TCGCCCAAGC CCGACGCCCC
GGCCCAGAAG CCTCCCAAGT TTTACCCCGC TGACGATGTC AGGAAGCCCC TCGTCAACAA GCACAAGCCC AAGCCCGCCA
AACTTAGGGC TAGCGTTACT CCAGGAACAG TGTTGATCCT GCTTGCTGGC AGATTCAAGG GAAAGAGGGT TGTTTTCCTG
AAGCAGCTTC CATCTGGATT GCTTCTGGTA ACAGGGCCAT TCAAGATCAA TGGTGTTCCT CTTAGAAGGG TGAACCAATC
TTATGTCATT GGTACATCTA CAAAAGTGGA CATCTCTGGT GCTAATGTTG ATAAATTTGA TGACAAGTAC TTTTCCAAGG
ATGCCAAGAA GAAGAAAACA AAGGGAGAAG GCGAGTTCTT TGAGGCAGAG AAGGAGGAGA AAAATGTTCT TCCCCAAGAG
AAGAAAGATG ACCAGAAAAC CGTGGATACT GCTTTGTTAA AGGCAATTGA GAGTGTTCCA GACCTGAAGT CTTACTTGGG
TGCTAGGTTT TCTTTGAAGG CAGGAATGAA GCCCCATGAA CTAGTCTTCT AGAGGCCAAA TTATTTTTCT CATTCTGTTT
TGTCGAGCTT TCTCTTCGTA ATAGTTGCAC TGTCTTCGTT GTACTGGAAC TTTATTTTTG TTAAAGTTTT TTTACCAGTT
TTGGTTCTAG TTGATTAATA CATTATTATC GATTGATACA TTAGTATGTG TTTTGTCTCC ATCGAAGTTA CTATCATGCG
TGTGCAGTAA CCAGGCAAAA AGTTTATTAT TTTGTTGTGG TGGATAAACT TACGTTATTT TACCTTTGAA CACCTATACT
ACCATTTTGT ATCCCATTCT GCCTCAATCG TGCTGCGATG TAAATTCTAG GGGAAAATGT TTAGTTGGTT TTAATCCTCT
AACACTGAAA TGTG

>Vigan.07G190000.01
ATGGCGCCGA AGAAGCCGAG AAGCGTGTCA AGGAACCCTG AACTCATTAG GGGTATTGGG AAGTACTCAA GGTCCCAGAT
GTACCACAAG AGGGGCATCT GGGCCATCAA GGCCAAACAC GGCGGCGTTT TCCCTCGCCA CGACCCTTCG CCCAAGCCCG
ACGCCCCGGC CCAGAAGCCT CCCAAGTTTT ACCCCGCTGA CGATGTCAGG AAGCCCCTCG TCAACAAGCA CAAGCCCAAG
CCCGCCAAAC TTAGGGCTAG CGTTACTCCA GGAACAGTGT TGATCCTGCT TGCTGGCAGA TTCAAGGGAA AGAGGGTTGT
TTTCCTGAAG CAGCTTCCAT CTGGATTGCT TCTGGTAACA GGGCCATTCA AGATCAATGG TGTTCCTCTT AGAAGGGTGA
ACCAATCTTA TGTCATTGGT ACATCTACAA AAGTGGACAT CTCTGGTGCT AATGTTGATA AATTTGATGA CAAGTACTTT
TCCAAGGATG CCAAGAAGAA GAAAACAAAG GGAGAAGGCG AGTTCTTTGA GGCAGAGAAG GAGGAGAAAA ATGTTCTTCC
CCAAGAGAAG AAAGATGACC AGAAAACCGT GGATACTGCT TTGTTAAAGG CAATTGAGAG TGTTCCAGAC CTGAAGTCTT
ACTTGGGTGC TAGGTTTTCT TTGAAGGCAG GAATGAAGCC CCATGAACTA GTCTTCTAG

>Vigan.07G190000.01
MAPKKPRSVS RNPELIRGIG KYSRSQMYHK RGIWAIKAKH GGVFPRHDPS PKPDAPAQKP PKFYPADDVR KPLVNKHKPK
PAKLRASVTP GTVLILLAGR FKGKRVVFLK QLPSGLLLVT GPFKINGVPL RRVNQSYVIG TSTKVDISGA NVDKFDDKYF
SKDAKKKKTK GEGEFFEAEK EEKNVLPQEK KDDQKTVDTA LLKAIESVPD LKSYLGARFS LKAGMKPHEL VF*