GBrowse Details

Vigan.07G190400.01

Basic Information:
Name: Vigan.07G190400.01
Multiple alignment
Variant Information
Position: Chr07:26343662..26347328 (+ strand)
Length: 3667
Functional Information:
Description: Similar to Chloroplast 30S ribosomal protein 2. [V5N8J2, Phaseolus vulgaris]
GO: Molecular Function: nucleotide binding (GO:0000166)
Molecular Function: nucleic acid binding (GO:0003676)
InterPro: RNA recognition motif domain (IPR000504)
Nucleotide-binding, alpha-beta plait (IPR012677)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:102.18,45.32,16.39,46.34,7.32,14.51,5.65,8.74
Arabidopsis thaliana homolog: AT3G52150.1
Automatic updates:
Name: NM_001361086 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition motif (RRM) domain-containing protein (LOC100783567), mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001361092 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max RNA recognition motif (RRM) domain-containing protein (LOC100811197), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:26343662..26343778 (+ strand)
Length: 117
Type: five_prime_UTR
Position: Chr07:26343779..26344063 (+ strand)
Length: 285
Type: CDS
Position: Chr07:26344945..26345046 (+ strand)
Length: 102
Type: CDS
Position: Chr07:26345161..26345460 (+ strand)
Length: 300
Type: CDS
Position: Chr07:26346897..26346935 (+ strand)
Length: 39
Type: CDS
Position: Chr07:26346936..26347328 (+ strand)
Length: 393
Type: three_prime_UTR


>Vigan.07G190400.01
CAACACTACT TTAGATAACA AGATAAACCT CAGACTCTCT CACTCCAAAA TCAAAACCTC CATTTGTTGT TCAGTTATAA
TATTGTATTC CGTTTCAGAT AACACAGCAC AATAACAATG GCTTCTCTTC ACTCTTCTCT TCTATTGCCT CCGAATCTCC
TTTCCCTTAC TTCTCCTTCA AGTTCCCCTA CTCACATTCT CTTGAATATG AGACCCTCCA CCACCCACTT GCGACCCCTT
TTCACCACAC GGCGTCGTTT TGGGAGACCC TTCGCAGTGG CTGAGCAGGC AACGGTGACG GAGGCCGCAA GAAGGCTCTA
CGTTGGAAAC ATTCCCCGCA CTGTCAACAA CGATGAGCTC GCCAAGATTG TTCAAGAACA TGGCGGTGTT GAGAAAGCTG
AGGTTATGTA TGATAAATAC TCTGGAAGGA GCCGTCGCTT TGCGTTTGTT ACAATGAAAA CTGTTGAGGA CGCAAATGCT
GTGATTGAGA AACTTAACGG CACTGAAATT GGAGGGCGTG AGATTAAAGT AAATGTTACT GAAAAACCTT TATCAGCATC
AGATTTGCCT TTATCCCAGG CTGAGGAATC TCAATTTATT GACAGTCCCC ACAAGGTGTA TGTGGGAAAT CTAGCCAAGA
CAGTAACAAC TGATACTCTT AAAAAGTTTT TTTCTGAGAA GGGAAAAGTT CTGAGTGCCA AGGTTTCACG GGTCCCTGGT
ACCTCAAAAT CCAGTGGGTA TGGTTTTGTT ACCTTTTCAT CAGAAGAGGA TGTAGAAGCT GCAATCTCGT CTTTCAACAA
TTCTTCATTA GAAGGGCAAA AAATCCGAGT GAACAAGGCA TAGAGAATTA GCAATGTTGC TGAGCATTTA TCTGACCATG
TACTGTCTAG CCAGAAAAAA GTAAACTTTG GGTGAGGCTG AAACCACTAA CAAATTTCCT TGTCTCTTTG TATAGCATAA
ACCTAATCAT TTTCAGTTGA CAAGGTTCTA CAAAAAAAAA TAGTGGTTAA TGCTTCTTGT AGACATTTCA CCTTGCTATT
TCTTCATCTT CATGTTGTTG CTCCCTTCTA CTCTACTCTG GTGATGTAAC TCTTGTTTAT ATATGCATGT ATTCAATTCC
ATTTTTGTCT GAATTTGAGT TACCATAAAA ACTGCACCAA GCATGCCTCC AATTTTTCCG ATTATTGCTC TTTCTTAGAT
AATACCAATC TATCATATAT TAAGTATTCT TGACAA

>Vigan.07G190400.01
ATGGCTTCTC TTCACTCTTC TCTTCTATTG CCTCCGAATC TCCTTTCCCT TACTTCTCCT TCAAGTTCCC CTACTCACAT
TCTCTTGAAT ATGAGACCCT CCACCACCCA CTTGCGACCC CTTTTCACCA CACGGCGTCG TTTTGGGAGA CCCTTCGCAG
TGGCTGAGCA GGCAACGGTG ACGGAGGCCG CAAGAAGGCT CTACGTTGGA AACATTCCCC GCACTGTCAA CAACGATGAG
CTCGCCAAGA TTGTTCAAGA ACATGGCGGT GTTGAGAAAG CTGAGGTTAT GTATGATAAA TACTCTGGAA GGAGCCGTCG
CTTTGCGTTT GTTACAATGA AAACTGTTGA GGACGCAAAT GCTGTGATTG AGAAACTTAA CGGCACTGAA ATTGGAGGGC
GTGAGATTAA AGTAAATGTT ACTGAAAAAC CTTTATCAGC ATCAGATTTG CCTTTATCCC AGGCTGAGGA ATCTCAATTT
ATTGACAGTC CCCACAAGGT GTATGTGGGA AATCTAGCCA AGACAGTAAC AACTGATACT CTTAAAAAGT TTTTTTCTGA
GAAGGGAAAA GTTCTGAGTG CCAAGGTTTC ACGGGTCCCT GGTACCTCAA AATCCAGTGG GTATGGTTTT GTTACCTTTT
CATCAGAAGA GGATGTAGAA GCTGCAATCT CGTCTTTCAA CAATTCTTCA TTAGAAGGGC AAAAAATCCG AGTGAACAAG
GCATAG

>Vigan.07G190400.01
MASLHSSLLL PPNLLSLTSP SSSPTHILLN MRPSTTHLRP LFTTRRRFGR PFAVAEQATV TEAARRLYVG NIPRTVNNDE
LAKIVQEHGG VEKAEVMYDK YSGRSRRFAF VTMKTVEDAN AVIEKLNGTE IGGREIKVNV TEKPLSASDL PLSQAEESQF
IDSPHKVYVG NLAKTVTTDT LKKFFSEKGK VLSAKVSRVP GTSKSSGYGF VTFSSEEDVE AAISSFNNSS LEGQKIRVNK
A*