VIGGS:GBrowse

Vigan.07G195800.01

Basic Information:

Name:	Vigan.07G195800.01 Multiple alignment Variant Information
Position:	Chr07:27053366..27055772 (- strand)
Length:	2407

Functional Information:

Description:	Similar to UPF0182 protein jk1603, putative. [XP_007052619.1, Theobroma cacao]
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:5.44,33.27,13.11,81.88,16.19,44.33,17.74,27.99

Automatic updates:

Name:	NM_001250637 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306614 (LOC100306614), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:27053366..27053812 (- strand)
Length:	447
Type:	three_prime_UTR

Position:	Chr07:27053813..27054062 (- strand)
Length:	250
Type:	CDS

Position:	Chr07:27055540..27055664 (- strand)
Length:	125
Type:	CDS

Position:	Chr07:27055665..27055772 (- strand)
Length:	108
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G195800.01
ATAAAAATTT TAAACCAGAA AATAAATGTG TAGATATTTA TTTAAAAATT TGATGGTCCT TGTTTGTTTT GTGTAGAGTG
TGAGTGTTTG TGAGAGTGAG AGAGTGATAT GGCGCTGAGA ATCTCACACG CAGCACTACC ACAGGCTCAG CTCAGACTAG
GGTTTCCTTC GCCACCTCAA TTTCTCTCCA TTGCTCCACC TCTCAAATTC TCTCTCTCCT CTTCTACCTT CAGGTGCAAA
GTTTTTAGGA GATTGAAAGT GAATCAGAGG CTGTTGACTG TGTTCGCAAC AAACCCTAAC TCTGTAGATG GGAAATCACC
CAAAGAAGGA TCAGATGTAA ATGAAACTAG CAATGCTTCT CAGGGTCCTC CTCTCCTTAC TATTTTGGCT GGATTTTTTG
TCCTTTTCGT CGTTTGTTGG AGCATTTGGT CCATTATAGC GTGGCTGATA AGTTTGATAG TTACTGCACC TGCTCCAAAA
TAAATTTGAT TATAATGTTT GTGTTTGTTT TAAGCCACTG CATTAGTCCT TATGGATTTG TCTTAGTTTC TTTCTACGCT
TTTTGACTTA GTAGTATTTG AGTGCTAAAC ATGCTAAAGT GAGCCAAAAG CTGGTAAAGG TAAGAAACAG AATTGGCAAC
TCCTAATGCT GGTCTTAAGT GGGAGAGAGC TTATGTTCAC GTCTGGGTAT TGTCAACCAT CTTTTAGTTA TAGATTCCAT
TGGGGCTGAC TTTGGTATAT ATTTTGAAGA ACTCTGTAGT TGCTTATTCT TTTGCTTATG TCTACTTATA TTCTGGAGAA
CAGTAGATCC ATTGGGTTAG ATATTTTGAA ACACGGCAGA GATTCTGGTA TTCCTAATTC AGTCTTTTAA AAAAGTTTAG
GGACTCGTAT ACTTGTTTTT ATTTCCAACT ACTATTTTTT TATCGCAAAA

[show][hide][copy]CDS

>Vigan.07G195800.01
ATGGCGCTGA GAATCTCACA CGCAGCACTA CCACAGGCTC AGCTCAGACT AGGGTTTCCT TCGCCACCTC AATTTCTCTC
CATTGCTCCA CCTCTCAAAT TCTCTCTCTC CTCTTCTACC TTCAGGTGCA AAGTTTTTAG GAGATTGAAA GTGAATCAGA
GGCTGTTGAC TGTGTTCGCA ACAAACCCTA ACTCTGTAGA TGGGAAATCA CCCAAAGAAG GATCAGATGT AAATGAAACT
AGCAATGCTT CTCAGGGTCC TCCTCTCCTT ACTATTTTGG CTGGATTTTT TGTCCTTTTC GTCGTTTGTT GGAGCATTTG
GTCCATTATA GCGTGGCTGA TAAGTTTGAT AGTTACTGCA CCTGCTCCAA AATAA

[show][hide][copy]PROTEIN

>Vigan.07G195800.01
MALRISHAAL PQAQLRLGFP SPPQFLSIAP PLKFSLSSST FRCKVFRRLK VNQRLLTVFA TNPNSVDGKS PKEGSDVNET
SNASQGPPLL TILAGFFVLF VVCWSIWSII AWLISLIVTA PAPK*