VIGGS:GBrowse

Vigan.07G198200.01

Basic Information:

Name:	Vigan.07G198200.01 Multiple alignment Variant Information
Position:	Chr07:27331005..27333754 (+ strand)
Length:	2750

Functional Information:

Description:	Similar to 40S ribosomal protein SA. [V7BSX9, Phaseolus vulgaris]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Cellular Component: small ribosomal subunit (GO:0015935)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein S2 (IPR001865)
	Ribosomal protein S2, eukaryotic/archaeal (IPR005707)
	Ribosomal protein S2, conserved site (IPR018130)
	Ribosomal protein S2, flavodoxin-like domain (IPR023591)
	Ribosomal protein S2, eukaryotic (IPR027498)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:28.86,82.70,60.45,24.91,91.80,142.08,44.47,37.70
Arabidopsis thaliana homolog:	AT1G72370.1

Automatic updates:

Name:	NM_001255415 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 40S ribosomal protein SA (LOC100818292), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001255533 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max 40S ribosomal protein SA (LOC100786575), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:27331005..27331161 (+ strand)
Length:	157
Type:	five_prime_UTR

Position:	Chr07:27331162..27331315 (+ strand)
Length:	154
Type:	CDS

Position:	Chr07:27332073..27332335 (+ strand)
Length:	263
Type:	CDS

Position:	Chr07:27332480..27332677 (+ strand)
Length:	198
Type:	CDS

Position:	Chr07:27332846..27333062 (+ strand)
Length:	217
Type:	CDS

Position:	Chr07:27333449..27333558 (+ strand)
Length:	110
Type:	CDS

Position:	Chr07:27333559..27333754 (+ strand)
Length:	196
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G198200.01
TCTGTCTGTG TTGTATTTCC CTCATCCGTT TCGATGAAGA GAGGGTATTA GCGTCATTTG CAATTATTAG GGTTTTGTGT
TTATAGAGGA GAATATTCGG AAACCCTAAT TACTCAAATC CAACCTCTCC AACTACGCCT CTTCGACTCC CGCAGCCATG
GCCGCTGCCG ACTCCTCCGC CGCCGCTCCT TTACGCCAGC TCTCGCAGAA GGAGACGGAC ATCCAGATGA TGCTCGCCGC
CGATGTGCAT CTCGGCACAA AAAACTGCGA CTTCCAAATG GAACGCTACG TCTTCAAGCG CCGCACTGAC GGTATATACA
TAATTAACCT TGGCAAAACA TGGGAGAAGC TCCTTCTTGC TGCTAGGATA ATTGTTGCCA TTGAGAACCC ACAAGATATC
ATTGTTCAGT CCGCCAGGCC TTATGGTCAG AGGGCAGTGC TTAAGTTTGC TCAATACACC GGGGCTCATG CAATTGCAGG
AAGGCACACT CCTGGAACAT TCACCAATCA GATGCAGACA TCCTACAATG AGCCTCGTCT TCTAATTCTC ACTGATCCAA
GAACAGATCA TCAGCCTATT AAGGAAGGTG CTCTTGGCAA CATTCCCACC ATTGCCTTTT GTGACACTGA TTCTCCAATG
CGGTATGTTG ACGTTGGGAT TCCGGCCAAT AATAAGGGGA AGCATAGCAT TGGTTGTCTG TTTTGGCTTT TAGCTCGGAT
GGTGCTGCAG ATGCGGGGTA CTATTCGTCC GGGTCACAAG TGGGATGTAA TGGTGGATTT ATTCTTCTAT AGAGAACCTG
AAGAAGCTAA GCAACAAGAG GAAGATGAAG CACCACCTGC CCAAGATTTT GCCATTGATT TCAATGATAC TGCCATTAGC
AGCTTCCCTG CCGACAGACA ATGGCCTACT GCACTCGACC AACCTTGGAC AGGGGACGCT CCACAACCAA TTCCAGCAGT
TCCTACTAAC TGGACCCCAG AAACAGCTGC TGCAGGAGAT TGGGGCGAGG CTGTTCCTGC ACCGGTTCCT GCTGCCGTAC
CGGCTCCACA AGTTGGTGTG CCTCCAGCCC AAACTTTTCC TGCTACTGGC TGGGACTAGG ACAAGATATT TTGATTCCAT
GGTGTTAAAA CCATAGTTTT TCTTCCCCTC GGCTCAGAAT TTTCCCTTCC GAGATTATCT TACAAAAGAA ACATAATTTG
CTTCTCAGTA AAATTTTGTT TGTTGACATA TTGTAGGAAA TTTTATCATT TAAATTTAAT AATTATTTAT TTCATAATGG
AACTAGTTTG AGACC

[show][hide][copy]CDS

>Vigan.07G198200.01
ATGGCCGCTG CCGACTCCTC CGCCGCCGCT CCTTTACGCC AGCTCTCGCA GAAGGAGACG GACATCCAGA TGATGCTCGC
CGCCGATGTG CATCTCGGCA CAAAAAACTG CGACTTCCAA ATGGAACGCT ACGTCTTCAA GCGCCGCACT GACGGTATAT
ACATAATTAA CCTTGGCAAA ACATGGGAGA AGCTCCTTCT TGCTGCTAGG ATAATTGTTG CCATTGAGAA CCCACAAGAT
ATCATTGTTC AGTCCGCCAG GCCTTATGGT CAGAGGGCAG TGCTTAAGTT TGCTCAATAC ACCGGGGCTC ATGCAATTGC
AGGAAGGCAC ACTCCTGGAA CATTCACCAA TCAGATGCAG ACATCCTACA ATGAGCCTCG TCTTCTAATT CTCACTGATC
CAAGAACAGA TCATCAGCCT ATTAAGGAAG GTGCTCTTGG CAACATTCCC ACCATTGCCT TTTGTGACAC TGATTCTCCA
ATGCGGTATG TTGACGTTGG GATTCCGGCC AATAATAAGG GGAAGCATAG CATTGGTTGT CTGTTTTGGC TTTTAGCTCG
GATGGTGCTG CAGATGCGGG GTACTATTCG TCCGGGTCAC AAGTGGGATG TAATGGTGGA TTTATTCTTC TATAGAGAAC
CTGAAGAAGC TAAGCAACAA GAGGAAGATG AAGCACCACC TGCCCAAGAT TTTGCCATTG ATTTCAATGA TACTGCCATT
AGCAGCTTCC CTGCCGACAG ACAATGGCCT ACTGCACTCG ACCAACCTTG GACAGGGGAC GCTCCACAAC CAATTCCAGC
AGTTCCTACT AACTGGACCC CAGAAACAGC TGCTGCAGGA GATTGGGGCG AGGCTGTTCC TGCACCGGTT CCTGCTGCCG
TACCGGCTCC ACAAGTTGGT GTGCCTCCAG CCCAAACTTT TCCTGCTACT GGCTGGGACT AG

[show][hide][copy]PROTEIN

>Vigan.07G198200.01
MAAADSSAAA PLRQLSQKET DIQMMLAADV HLGTKNCDFQ MERYVFKRRT DGIYIINLGK TWEKLLLAAR IIVAIENPQD
IIVQSARPYG QRAVLKFAQY TGAHAIAGRH TPGTFTNQMQ TSYNEPRLLI LTDPRTDHQP IKEGALGNIP TIAFCDTDSP
MRYVDVGIPA NNKGKHSIGC LFWLLARMVL QMRGTIRPGH KWDVMVDLFF YREPEEAKQQ EEDEAPPAQD FAIDFNDTAI
SSFPADRQWP TALDQPWTGD APQPIPAVPT NWTPETAAAG DWGEAVPAPV PAAVPAPQVG VPPAQTFPAT GWD*