VIGGS:GBrowse

Vigan.07G198400.01

Basic Information:

Name:	Vigan.07G198400.01 Multiple alignment Variant Information
Position:	Chr07:27342698..27348598 (- strand)
Length:	5901

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MJH3, Glycine max]
InterPro:	Calycin-like (IPR011038)
InterPro:	Domain of unknown function DUF1794 (IPR014878)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.86,7.47,9.62,11.04,10.12,12.91,5.01,6.45
Arabidopsis thaliana homolog:	AT1G79260.1

Automatic updates:

Name:	NM_001249150 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306509 (LOC100306509), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:27342698..27343313 (- strand)
Length:	616
Type:	three_prime_UTR

Position:	Chr07:27343314..27343433 (- strand)
Length:	120
Type:	CDS

Position:	Chr07:27346862..27346930 (- strand)
Length:	69
Type:	CDS

Position:	Chr07:27347607..27347747 (- strand)
Length:	141
Type:	CDS

Position:	Chr07:27348262..27348438 (- strand)
Length:	177
Type:	CDS

Position:	Chr07:27348439..27348598 (- strand)
Length:	160
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G198400.01
TTTTTAGAAA GTCACCAGCT TTTGGACGTC TAGCTATCAT CACCTTCGTA AACACAGAAC AAAGTAACAC ACAAGTTAAG
TTACAGCAAT AAATCCAAAT ACCCATTTTG GATTCTACAA TAATTGGGTT CACATAAACA TTTTCCAAAG AAAAACAGAG
ATGGATGCTG AAAAGAATTC TCCGACGCCG GTAACATCAC CGCCTGTGAT ACACCCCGCG GTGGCACCGC TCTCCTTCCT
TCTGGGCACT TGGAGGGGCC AAGGAGAAGG AGGCTTCCCC ACTATACATT CCTTCTCCTA TGGCGAAGAG CTTTTCTTCT
CCCATTCCCC CAACAAGCCT GTGATAGGGT ACACTCAGAA GACATGGAAA CTCAGCTCTG GAGAGCCTAT GCACGGTGAG
AGTGGATACT GGCGTCCTAA ACCTGATGGC ACCATGGAAG TTGTGATTGC TCAAAGCAAT GGTCTTGTGG AAGTTCAGAA
AGGGACATAC AGCTTTGAAG AGAATGTGAT ACAACTTCAG AGTGAAATGG TGGGGAATGC TTCTAAGGTT AAAGAGATAA
GAAGAAGTTT TAAGGTGGTT GATGGGGTTC TTTGTTATGA GGTTCAGATG GCTACCAACA CAGTAAGTCT TCAACCACAC
TTGAAAGCAA CACTGAAGAA GCTCTGAAGC AGTCACCACC TCTTGAAGAA GAAGCAACAC TTGGCATTGT GACCTCACCA
AATCTTTTTT AACAACAATT TAGACTACCC TGGTAATTCT CTGTTAACTA GCAAAATCAG CTGTTCAAAA CTCTTCTATA
CAAGCTTTGC AAGGCCTCAA CTTTGAACAA TCTGACATGA CTTAATTTTA TTGGAAGCAG CTAAGCAGGA AAAATGAGCT
TATCCTAATG TACATCATAC TTTATGCTTG ATTTTAATTT CTTTCTTTGA AGCTATTATG ATGCTTGAAA TAATAACTAT
ATTTTATACT CAAACTGAAA CTAGATTTCT TCTCTACCTT CTGCTGATTT TGATGAACCA GCATCAAAAG GAATTGTACA
CTAAGTTAGA CTTGTACAGG CTTAGTGGGT ATTCGGACAG TGATTGATGA GGAGATGTAG ATGACCAGAA GAGCATGACT
CATTATTATG TTTTCTTCAT GAGAAATACA ACATTTAATT GGTTCTCAAA GAAATAACCC ATTGTAACAC TATCAATGTG
TAAAGCTGAA TATATGGCAG CATCTTGAAG TATCCGACAT GCAATCTAGC TTATAAACTT GCTACGGAAT TTGTAAATAA
TGT

[show][hide][copy]CDS

>Vigan.07G198400.01
ATGGATGCTG AAAAGAATTC TCCGACGCCG GTAACATCAC CGCCTGTGAT ACACCCCGCG GTGGCACCGC TCTCCTTCCT
TCTGGGCACT TGGAGGGGCC AAGGAGAAGG AGGCTTCCCC ACTATACATT CCTTCTCCTA TGGCGAAGAG CTTTTCTTCT
CCCATTCCCC CAACAAGCCT GTGATAGGGT ACACTCAGAA GACATGGAAA CTCAGCTCTG GAGAGCCTAT GCACGGTGAG
AGTGGATACT GGCGTCCTAA ACCTGATGGC ACCATGGAAG TTGTGATTGC TCAAAGCAAT GGTCTTGTGG AAGTTCAGAA
AGGGACATAC AGCTTTGAAG AGAATGTGAT ACAACTTCAG AGTGAAATGG TGGGGAATGC TTCTAAGGTT AAAGAGATAA
GAAGAAGTTT TAAGGTGGTT GATGGGGTTC TTTGTTATGA GGTTCAGATG GCTACCAACA CAGTAAGTCT TCAACCACAC
TTGAAAGCAA CACTGAAGAA GCTCTGA

[show][hide][copy]PROTEIN

>Vigan.07G198400.01
MDAEKNSPTP VTSPPVIHPA VAPLSFLLGT WRGQGEGGFP TIHSFSYGEE LFFSHSPNKP VIGYTQKTWK LSSGEPMHGE
SGYWRPKPDG TMEVVIAQSN GLVEVQKGTY SFEENVIQLQ SEMVGNASKV KEIRRSFKVV DGVLCYEVQM ATNTVSLQPH
LKATLKKL*