GBrowse Details

Vigan.07G200300.01

Basic Information:
Name: Vigan.07G200300.01
Multiple alignment
Variant Information
Position: Chr07:27627958..27631729 (+ strand)
Length: 3772
Functional Information:
Description: Similar to Carboxyl-terminal peptidase. [B6U8T6, Zea mays]
InterPro: Domain of unknown function DUF239 (IPR004314)
Domain of unknown function DUF4409 (IPR025521)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.50,0.41,45.05,55.84,168.32,91.56,39.86,87.13
Arabidopsis thaliana homolog: AT1G55360.1, AT2G44210.2, AT3G13510.1, AT5G56530.1
Automatic updates:
Name: NM_001254363 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100813504 (LOC100813504), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:27627958..27628597 (+ strand)
Length: 640
Type: five_prime_UTR
Position: Chr07:27628598..27628759 (+ strand)
Length: 162
Type: CDS
Position: Chr07:27629135..27629221 (+ strand)
Length: 87
Type: CDS
Position: Chr07:27629358..27629612 (+ strand)
Length: 255
Type: CDS
Position: Chr07:27630033..27630197 (+ strand)
Length: 165
Type: CDS
Position: Chr07:27630339..27630392 (+ strand)
Length: 54
Type: CDS
Position: Chr07:27630489..27630635 (+ strand)
Length: 147
Type: CDS
Position: Chr07:27630903..27631280 (+ strand)
Length: 378
Type: CDS
Position: Chr07:27631281..27631729 (+ strand)
Length: 449
Type: three_prime_UTR


>Vigan.07G200300.01
CTAAGGGGCA AAATGGTAAT TCCAGAAGTG AAGATAGTTG GTCCATTGTA GCGGGAACTA ACACTCTTTT CTCTCTCTTA
GCACTGTGAG TAGTGGAACC TCTATTTTCT GATAGAACAC GACCATGCAT TTCCATAAAA GACTTTTTGC TTTGGTCATG
AGTTCCCATA ATGCCCTTCT CTTTTCCCTT GAAAGCGTCG GCAGTGTATT TTGTAGGCTT GTGAGGAACA AAGCTACAAA
TAAGGAACCC CCAAGGAGGG GAATTTTAAG GGCCCCTCTC TTACTCAACC CTGTCAAAGG TGTCAAGCAC ATTTTTTTGT
TTGTATTTTG TGTGCAGCAA AGGGTGGTGC TGCTTGTTGC GGTTGGTGGT GGGGTGCGCA GGATAAGCAG CAAAGTTGGG
TGAAGGGTAG GGAGAGAGAA TCAAAGACTC CAATTTTTTT AAAAAAATAT ATATAAAAAG GGAAGAGAAA AAAGATTGGC
CTTTTTATTA ACAAGAAAAC AACCCATCAT AGTTTTAAGG CCATTTAATT GGTTCCTCTT GGTCTTGTGT GTGCGCTATA
AATCTTTTAT GGTTTTTGAT TACCCTTTGG GTTCTATAGG GAGTCTTAGA AACCCACTTT GAGATTTCTC GTTGAGTTGA
ATGCTTTTGG TTAGGAAGGT TGCTGCAATG GGGAAGGTTG TGTTGTTGTT TCTTTACATG TTGGTGGTGG TGGTGCCTTT
GGCTTTTGCT GATTCAAGTC AGAAGCTTGA GGTTCAGAAG CAATTGAAGA ACTTGAATAG GCCTCCCGTA AGGTCCATCA
AGAGTCCTGA TGGAGATATT ATTGACTGTG TCCATGTCTC ACACCAGCCA GCTTTGGATC ACCCTCACCT CAAAAATCAC
AAGATTCAGA TGAAACCAAA TTTCCATCCT GAAGGGCACC CTTTTGGGGA GAGCAAAGTC TCTTCAAATT CGAAGCCTAT
TACTCAGCTG TGGCACCAAA ATGGAAGGTG CCCTCAAGGA ACAATTCCTG TCAGAAGGAC CTCAAAGAAT GAAATATTAA
GGGCAAGCTC TATTCAACAA TTTGGAAAGA AGAAGGTAAG GAGCTTCCCT CAGCCAAAGC CAGCAAAACC TCTACCAGAC
CTCATCAGTC AGAGTGGCCA CCAGCATGCC ATAGCTTATG TGGAGGGGGA TAAGTATTAT GGAGCCAAGG CAACCATAAA
CGTTTGGGAC CCAAAAATTC AACAACCCAA TGAATTTAGC CTGTCTCAAA TGTGGATTCT GGGTGGCTCT TTTGGTCAAG
ATCTCAACAG CATTGAAGCA GGTTGGCAGG TCAGCCCTGA TTTGTATGGA GACAACAACA CTAGACTCTT CACTTATTGG
ACAAGTGATG CATATCAAGC TACTGGTTGT TATAATCTCC TTTGCTCTGG CTTTATTCAA ATTAACAGTG ATATAGCTCT
AGGAGCAAGC ATCTCCCCTC TTTCCAAGTA TAGCTCTTCC CAATATGATA TCAGCATCCT GGTCTGGAAG GACCCCAAAG
AGGGTAACTG GTGGATGCAG TTTGGAAGTG ATCATGTTAT GGGATACTGG CCAGCTCCTC TATTCTCGTA CCTTTCTGAC
AGTGCCTCAA TGATTGAGTG GGGGGGAGAG GTTGTGAACT CTGAATCTGA TGGCCAACAC ACCTCAACTC AAATGGGAAG
TGGCCATTTC CCTGAGGAAG GTTTTGGCAA GGCTAGTTAC TTCAAGAACA TTCAGGTTGT TGATGGTAAC AACAAGCTTA
GAGCTCCAAA GGATCTTGGC ACTTACACTG AGCAAGATAG CTGCTACAAT GTTCAAACTG GCAGTGCCGG AGATTGGGGT
AACTACTTCT ATTATGGTGG TCCTGGTAGA AACCCCAATT GCCCTTGATC ATTCATGTCA AGCAAAGAAA ACTGAAAAGA
AAAAAAAAGG ATGAGTAGGT GTTCTTTTTG TCTAGTTTAG CTGTTTTAGT AACTTGTGGT ACAACTTAGA GTTGTGGTGT
ATAATGAAGC TCTTGATCCT TCAAAGTCTC CAAAAAATTG TTGGAGAAAA AGGCAGTGAG TTTCTTAGAT TTACAAGAAA
CAAGTTTCTT CATTGGTTTT CCTGTTTATA TATATATATA TATTTGTTGT TTTTGTTTGC TCCTCTCTCT GGAGCTGTGA
AGGCTGAGTT GTGAATGTGA ACAGAATATT CTGTTATGGT ACATGGAGAC TGTATTTTTT TATTTTAATT ACTGCCATGT
TTCGTCAGTG AAAAGCTGTC TCAATAAGGA CATTTGTTTA TGTTTATGCT CTTGCTTGTG ACCTAACCTA AGTGGGTGGC
TTTTTAATTG AAGAAAG

>Vigan.07G200300.01
ATGCTTTTGG TTAGGAAGGT TGCTGCAATG GGGAAGGTTG TGTTGTTGTT TCTTTACATG TTGGTGGTGG TGGTGCCTTT
GGCTTTTGCT GATTCAAGTC AGAAGCTTGA GGTTCAGAAG CAATTGAAGA ACTTGAATAG GCCTCCCGTA AGGTCCATCA
AGAGTCCTGA TGGAGATATT ATTGACTGTG TCCATGTCTC ACACCAGCCA GCTTTGGATC ACCCTCACCT CAAAAATCAC
AAGATTCAGA TGAAACCAAA TTTCCATCCT GAAGGGCACC CTTTTGGGGA GAGCAAAGTC TCTTCAAATT CGAAGCCTAT
TACTCAGCTG TGGCACCAAA ATGGAAGGTG CCCTCAAGGA ACAATTCCTG TCAGAAGGAC CTCAAAGAAT GAAATATTAA
GGGCAAGCTC TATTCAACAA TTTGGAAAGA AGAAGGTAAG GAGCTTCCCT CAGCCAAAGC CAGCAAAACC TCTACCAGAC
CTCATCAGTC AGAGTGGCCA CCAGCATGCC ATAGCTTATG TGGAGGGGGA TAAGTATTAT GGAGCCAAGG CAACCATAAA
CGTTTGGGAC CCAAAAATTC AACAACCCAA TGAATTTAGC CTGTCTCAAA TGTGGATTCT GGGTGGCTCT TTTGGTCAAG
ATCTCAACAG CATTGAAGCA GGTTGGCAGG TCAGCCCTGA TTTGTATGGA GACAACAACA CTAGACTCTT CACTTATTGG
ACAAGTGATG CATATCAAGC TACTGGTTGT TATAATCTCC TTTGCTCTGG CTTTATTCAA ATTAACAGTG ATATAGCTCT
AGGAGCAAGC ATCTCCCCTC TTTCCAAGTA TAGCTCTTCC CAATATGATA TCAGCATCCT GGTCTGGAAG GACCCCAAAG
AGGGTAACTG GTGGATGCAG TTTGGAAGTG ATCATGTTAT GGGATACTGG CCAGCTCCTC TATTCTCGTA CCTTTCTGAC
AGTGCCTCAA TGATTGAGTG GGGGGGAGAG GTTGTGAACT CTGAATCTGA TGGCCAACAC ACCTCAACTC AAATGGGAAG
TGGCCATTTC CCTGAGGAAG GTTTTGGCAA GGCTAGTTAC TTCAAGAACA TTCAGGTTGT TGATGGTAAC AACAAGCTTA
GAGCTCCAAA GGATCTTGGC ACTTACACTG AGCAAGATAG CTGCTACAAT GTTCAAACTG GCAGTGCCGG AGATTGGGGT
AACTACTTCT ATTATGGTGG TCCTGGTAGA AACCCCAATT GCCCTTGA

>Vigan.07G200300.01
MLLVRKVAAM GKVVLLFLYM LVVVVPLAFA DSSQKLEVQK QLKNLNRPPV RSIKSPDGDI IDCVHVSHQP ALDHPHLKNH
KIQMKPNFHP EGHPFGESKV SSNSKPITQL WHQNGRCPQG TIPVRRTSKN EILRASSIQQ FGKKKVRSFP QPKPAKPLPD
LISQSGHQHA IAYVEGDKYY GAKATINVWD PKIQQPNEFS LSQMWILGGS FGQDLNSIEA GWQVSPDLYG DNNTRLFTYW
TSDAYQATGC YNLLCSGFIQ INSDIALGAS ISPLSKYSSS QYDISILVWK DPKEGNWWMQ FGSDHVMGYW PAPLFSYLSD
SASMIEWGGE VVNSESDGQH TSTQMGSGHF PEEGFGKASY FKNIQVVDGN NKLRAPKDLG TYTEQDSCYN VQTGSAGDWG
NYFYYGGPGR NPNCP*