GBrowse Details

Vigan.07G205900.01

Basic Information:
Name: Vigan.07G205900.01
Multiple alignment
Variant Information
Position: Chr07:28444527..28449368 (+ strand)
Length: 4842
Functional Information:
Description: Similar to Uncharacterized protein. [I1KU11, Glycine max]
InterPro: Lateral organ boundaries, LOB (IPR004883)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.13,0.07,3.59,0.94,4.83,22.14,36.54,5.19
Automatic updates:
Name: NM_001254434 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LOB domain-containing protein 4-like (LOC100790989), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001354004 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LBD domain-containing transcription factor (LBD32), mRNA.
PubMed ID: 28464070 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:28444527..28444678 (+ strand)
Length: 152
Type: five_prime_UTR
Position: Chr07:28444679..28444855 (+ strand)
Length: 177
Type: CDS
Position: Chr07:28448426..28448797 (+ strand)
Length: 372
Type: CDS
Position: Chr07:28448798..28449368 (+ strand)
Length: 571
Type: three_prime_UTR


>Vigan.07G205900.01
CTTCTCCTCT CTCTACCTCT CTTTTCTCTC CTTTTCCTAT CTTCATTTTC ACCCTCATTA TCCCATCTTC ATTAATTTGC
TTCTAGCTAG GTTTCTGAAA CAACCTTAAT ACCTCAGAGG GCTAGCACAT TGTCTTGTTT TCCCATAAGA ACATGAAAGA
GAATGGTAGA AAACTAGGTA CCATGTCGCC ATGTGCGGCA TGCAAGCTTC TTCGAAGGAG GTGCACGAGA GATTGTGTGT
TTGCTCCTTA TTTTCCTGCT GATGAACCCC AGAAGTTTGG TAGTGTGCAC AAGGTTTTCG GGGCTAGCAA TGTGAACAAA
ATGCTACAGG AATTACCTGA GCACCAAAGA AGTGATGCAG TAAGTTCAAT GGTGTATGAA GCAAATGCAA GAGTGAGGGA
CCCTGTGTAT GGATGTGTGG GAGCCATTTC CTCACTCCAA CAACAAGTTG ATGAGCTCCA AACCCAATTG GCACTGGCAC
AAGCAGAGGT TGTTCACATG AGAATGAGCC AATTCTCACC ACCATCATCG GATCAACACC ACCACCGTCA AGCCTCCCTA
ATGCCTCATG AACCCTCCAA TTCATCATCA GAAAACATGT TCCAATCTAG CAGGGTCTTG TCTTCACAAA GCAAGTCTTT
TTTTGGCATG GACATGGTCG TTGATCAGAC CATCATGGGG CAATCTTTGT GGTCATACTA GCTTCTCTCA TGGCATGCAT
GCCTTCACTT TCTTCATTTT CCTGTTGTCA TTATTACATT ATCACGGGCT TGCTTTATTG TCTGCCTCGT TACCACTTTT
TCTCTGCTTT GTTTCCCTCA CTATCATATA TCTTTACCTT AGTCTCTTCT CATGACTCAA AGGACATCCA TCTATCTCTC
TGCATTACCA AGAGATGATC ATGATGATTA GTTAGTCCTA GTGTAAATGT CTAAACTTGT AATTATGAGT AATCATATAA
TTAGTATTAA GTTGACTATA CTTTTTCACT TCCTCTTCTT CACTATCTAT GTCACCATTT TGTTCCAAAC ATCATCATTT
TCGTGTGCTA GAGAGAACGA AAATCAAAGT ATAAAAACTA TTGATAAAGC TGGACGGGTC TTGCTACGAT GAAGTAGCAA
AAAAGTGTCT CGTGGGTTAG TCACTCGGGA AAATAATGTT GGATATATTA ATATTTTAAT TAACTTTGTC AAGATAAATG
TAAATGAATT TAATTTTACT TGATGAATGG ATGGAAGGAA TGGTAGACAA CCGTACAAAT TTAGATTTTG TA

>Vigan.07G205900.01
ATGAAAGAGA ATGGTAGAAA ACTAGGTACC ATGTCGCCAT GTGCGGCATG CAAGCTTCTT CGAAGGAGGT GCACGAGAGA
TTGTGTGTTT GCTCCTTATT TTCCTGCTGA TGAACCCCAG AAGTTTGGTA GTGTGCACAA GGTTTTCGGG GCTAGCAATG
TGAACAAAAT GCTACAGGAA TTACCTGAGC ACCAAAGAAG TGATGCAGTA AGTTCAATGG TGTATGAAGC AAATGCAAGA
GTGAGGGACC CTGTGTATGG ATGTGTGGGA GCCATTTCCT CACTCCAACA ACAAGTTGAT GAGCTCCAAA CCCAATTGGC
ACTGGCACAA GCAGAGGTTG TTCACATGAG AATGAGCCAA TTCTCACCAC CATCATCGGA TCAACACCAC CACCGTCAAG
CCTCCCTAAT GCCTCATGAA CCCTCCAATT CATCATCAGA AAACATGTTC CAATCTAGCA GGGTCTTGTC TTCACAAAGC
AAGTCTTTTT TTGGCATGGA CATGGTCGTT GATCAGACCA TCATGGGGCA ATCTTTGTGG TCATACTAG

>Vigan.07G205900.01
MKENGRKLGT MSPCAACKLL RRRCTRDCVF APYFPADEPQ KFGSVHKVFG ASNVNKMLQE LPEHQRSDAV SSMVYEANAR
VRDPVYGCVG AISSLQQQVD ELQTQLALAQ AEVVHMRMSQ FSPPSSDQHH HRQASLMPHE PSNSSSENMF QSSRVLSSQS
KSFFGMDMVV DQTIMGQSLW SY*