GBrowse Details

Vigan.07G207300.01

Basic Information:
Name: Vigan.07G207300.01
Multiple alignment
Variant Information
Position: Chr07:28630307..28634951 (+ strand)
Length: 4645
Functional Information:
Description: Similar to Phosphoglycerate kinase. [V7BT83, Phaseolus vulgaris]
GO: Biological Process: glycolysis (GO:0006096)
Molecular Function: phosphoglycerate kinase activity (GO:0004618)
InterPro: Phosphoglycerate kinase (IPR001576)
Phosphoglycerate kinase, N-terminal (IPR015824)
Phosphoglycerate kinase, C-terminal (IPR015901)
Phosphoglycerate kinase, conserved site (IPR015911)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:222.31,128.61,88.88,744.42,37.67,161.97,16.75,128.28
Arabidopsis thaliana homolog: AT1G56190.1, AT1G79550.1, AT3G12780.1
Automatic updates:
Name: NM_001360374 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative phosphoglycerate kinase (LOC100801951), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:28630307..28630630 (+ strand)
Length: 324
Type: five_prime_UTR
Position: Chr07:28630631..28631035 (+ strand)
Length: 405
Type: CDS
Position: Chr07:28632377..28632454 (+ strand)
Length: 78
Type: CDS
Position: Chr07:28632573..28632833 (+ strand)
Length: 261
Type: CDS
Position: Chr07:28633053..28633370 (+ strand)
Length: 318
Type: CDS
Position: Chr07:28633534..28633692 (+ strand)
Length: 159
Type: CDS
Position: Chr07:28633986..28634195 (+ strand)
Length: 210
Type: CDS
Position: Chr07:28634196..28634951 (+ strand)
Length: 756
Type: three_prime_UTR


>Vigan.07G207300.01
GAAAAATGCA GTTTTGTGTT CATTGATTGA TGACATTAGC AGTAATAAAC TAAAATGTTT AAGCAGAAGA GAAATTTATG
GCGGTGTTTG AAGAAGGAAG TGGGTGGAAT AAAAAAAGAG TGAAAAAGCA AGGAAGATCT TGAACCTCTC CTGAACGATA
AGAGAAATCC AAAATCCTCT CACCACACCC AATCGTTCAC CCTTTGTACT TCACGTCCAC ATCTTTCGTC TCTCTCCTTT
CACCAAATAC TATCAAACCT CTTCTTTCGC ACTCGTTTTT TCTTCACACT CACTCAAATC AAACACTCTC TTTCTCTCTC
TGCAATGGCC TCAGCCGCAG CCCCCACCAC TTTCTCTCTG CTCCACTCCG CCACCTCCAC CTCGTCTTCC TCGCGCGTGA
AGCTCTCCTC CTCCCTCCGC GTCCGCCCGC TCACGCGCCA CCTGGGGTTC AGGGTGGCCG ACCCGCTGCT GGCAGCGAAT
GTGGCGGCGC GGGTGGCCGC GGTGAGGGTC GGGAGGGGCA GGAGAGGGGT GGTGTCGATG GCTAAGAAAA GCGTGGGCGA
CCTGACTACT GCGGACTTGA AAGGAAAGAA GGTGTTCGTG AGGGCTGACC TCAACGTCCC GCTCGACGAC AACCAGAACA
TCACTGACGA CACCAGAATC CGAGCCGCCA TTCCCACCAT CAAATACCTC GTTGAAAACG GCGCCAAAGT CATCCTCTCT
AGCCACTTGG GGCGACCGAA GGGTGTCACT CCCAAATACA GCTTGGCTCC TCTTGTATCT CGGATTTCTG AACTCCTTGG
TTTCCCGGTT GTCAAGGCTG AGGATAGTAT TGGTCCAGAA GTGGAAAAGT TGGTGGCTTC TCTTCCAGAA GGAGGTGTTC
TTCTTCTAGA AAATGTGAGG TTTTACAAGG AGGAAGAAAA GAATGATCCT GAGCATGCAA AAAAGCTTGC CTCTCTAGCA
GATCTGTTTG TGAATGATGC ATTTGGTACT GCTCATAGGG CACATGCATC AACAGAGGGG GTTACTAAAT ACTTGAAACC
ATCTGTTGCT GGTTTTCTTT TGCAAAAGGA ACTTGATTAC CTTGTTGGGG CAGTATCAAG CCCAAAAAGA CCATTTGCTG
CCATTGTTGG TGGTTCCAAG GTCTCATCTA AAATTGGAGT GATTGAGTCA CTTTTAGAAA AGGTTGATAT CCTTCTTCTT
GGTGGAGGAA TGATCTTCAC ATTTTACAAG GCACAAGGTC TTTCAGTGGG TTCTTCCCTT GTAGAGGAAG ATAAATTGGA
TCTTGCTACA TCACTACTTG CAAAAGCCAA GGAAAAGGGG GTGTCTCTCT TGTTACCAAG TGATGTGGTG ATTGCGGACA
AATTTGCTCC CGATGCAAAT AGCAAGGTCG TGCCAGCATC TGCCATCCCT GATGGCTGGA TGGGATTGGA TATTGGTCCA
GATTCTGTTA AATCATTCAG TGAAGCATTG GGTACAACCA AAACCATCAT ATGGAATGGA CCAATGGGAG TGTTTGAATT
TGACAAGTTT GCTGTTGGTA CAGAGGCTAT TGCCAAGAAG CTAGCTGACC TCAGTCAAAA TGGAGTCACC ACGATTATTG
GAGGAGGTGA TTCTGTTGCA GCTGTAGAGA AAGTTGGAGT TGCCAATGTC ATGAGCCACA TATCTACTGG TGGTGGTGCC
AGTTTGGAGT TATTGGAAGG CAAAGAGCTT CCTGGAGTCC TTGCTCTTGA TGAAGCCACA CCAGTCCCTG TGTAAGACAA
TTTTCAGCTT GGAAAATTTT CCCATCCTGA GTTGTCAGTC TTGTGAAAGA GCATGTGTTT TAGGACCGAT CCGAGTCTGT
TAGTGTAAAT TTAATCATGC TTGAGTTATT GACTTCACTC ATAAATTGCG TGTAACTGTA AACACTGGCT GAGAGCCATA
AATTCAAATA AATCCTTGAG TTGCTGCCAG AAGCATTTTG CACTTTGATT TGTCTTATGT CACACTCCTG ACTGGCGCCA
TTTGGTCCCG GGTACACTGT AACAAGTCTT AAACAACTAC GAGGATTATT GTAGGAACAG AAGATGAAAG GTATGGTGCA
AAATTTGCTG CCAGTGTAAT CTAATTTAAA TTCAAATAAA TCTATTGGTT GCTGCCAGAA GCTATTTACA CTTTGCTTTT
ATCTTATGTC TTCCTGCAAA ATCCTTGAAC ACGAACCAAG TTTTTGTCGG CATTGTATGC ATTTCTTTAT TTTATCTTCC
AGGGGCGAAA CTGTTTGCAC TCAATGACGT GACTGTCATC TGTCAAGAGA GATTGCAACC AATGATTCTT GTGAATTTAG
ACCTTTTAGC CAATGTTTAT TTCGGTTCAT TTGACGCTTA AGAGGATATG AGAAGATTAG AGAGGATTGG AATGGTTTGT
TTGAGTTGAT TTCCTAGAAG TGGCTAGGAA AGTTCTGGGA GCTCCACTAG TATTACTTTC AATGGGTTGT ACTTGGATTT
ATTTAATGAA AGATCAATTT AAACTTTTGA A

>Vigan.07G207300.01
ATGGCCTCAG CCGCAGCCCC CACCACTTTC TCTCTGCTCC ACTCCGCCAC CTCCACCTCG TCTTCCTCGC GCGTGAAGCT
CTCCTCCTCC CTCCGCGTCC GCCCGCTCAC GCGCCACCTG GGGTTCAGGG TGGCCGACCC GCTGCTGGCA GCGAATGTGG
CGGCGCGGGT GGCCGCGGTG AGGGTCGGGA GGGGCAGGAG AGGGGTGGTG TCGATGGCTA AGAAAAGCGT GGGCGACCTG
ACTACTGCGG ACTTGAAAGG AAAGAAGGTG TTCGTGAGGG CTGACCTCAA CGTCCCGCTC GACGACAACC AGAACATCAC
TGACGACACC AGAATCCGAG CCGCCATTCC CACCATCAAA TACCTCGTTG AAAACGGCGC CAAAGTCATC CTCTCTAGCC
ACTTGGGGCG ACCGAAGGGT GTCACTCCCA AATACAGCTT GGCTCCTCTT GTATCTCGGA TTTCTGAACT CCTTGGTTTC
CCGGTTGTCA AGGCTGAGGA TAGTATTGGT CCAGAAGTGG AAAAGTTGGT GGCTTCTCTT CCAGAAGGAG GTGTTCTTCT
TCTAGAAAAT GTGAGGTTTT ACAAGGAGGA AGAAAAGAAT GATCCTGAGC ATGCAAAAAA GCTTGCCTCT CTAGCAGATC
TGTTTGTGAA TGATGCATTT GGTACTGCTC ATAGGGCACA TGCATCAACA GAGGGGGTTA CTAAATACTT GAAACCATCT
GTTGCTGGTT TTCTTTTGCA AAAGGAACTT GATTACCTTG TTGGGGCAGT ATCAAGCCCA AAAAGACCAT TTGCTGCCAT
TGTTGGTGGT TCCAAGGTCT CATCTAAAAT TGGAGTGATT GAGTCACTTT TAGAAAAGGT TGATATCCTT CTTCTTGGTG
GAGGAATGAT CTTCACATTT TACAAGGCAC AAGGTCTTTC AGTGGGTTCT TCCCTTGTAG AGGAAGATAA ATTGGATCTT
GCTACATCAC TACTTGCAAA AGCCAAGGAA AAGGGGGTGT CTCTCTTGTT ACCAAGTGAT GTGGTGATTG CGGACAAATT
TGCTCCCGAT GCAAATAGCA AGGTCGTGCC AGCATCTGCC ATCCCTGATG GCTGGATGGG ATTGGATATT GGTCCAGATT
CTGTTAAATC ATTCAGTGAA GCATTGGGTA CAACCAAAAC CATCATATGG AATGGACCAA TGGGAGTGTT TGAATTTGAC
AAGTTTGCTG TTGGTACAGA GGCTATTGCC AAGAAGCTAG CTGACCTCAG TCAAAATGGA GTCACCACGA TTATTGGAGG
AGGTGATTCT GTTGCAGCTG TAGAGAAAGT TGGAGTTGCC AATGTCATGA GCCACATATC TACTGGTGGT GGTGCCAGTT
TGGAGTTATT GGAAGGCAAA GAGCTTCCTG GAGTCCTTGC TCTTGATGAA GCCACACCAG TCCCTGTGTA A

>Vigan.07G207300.01
MASAAAPTTF SLLHSATSTS SSSRVKLSSS LRVRPLTRHL GFRVADPLLA ANVAARVAAV RVGRGRRGVV SMAKKSVGDL
TTADLKGKKV FVRADLNVPL DDNQNITDDT RIRAAIPTIK YLVENGAKVI LSSHLGRPKG VTPKYSLAPL VSRISELLGF
PVVKAEDSIG PEVEKLVASL PEGGVLLLEN VRFYKEEEKN DPEHAKKLAS LADLFVNDAF GTAHRAHAST EGVTKYLKPS
VAGFLLQKEL DYLVGAVSSP KRPFAAIVGG SKVSSKIGVI ESLLEKVDIL LLGGGMIFTF YKAQGLSVGS SLVEEDKLDL
ATSLLAKAKE KGVSLLLPSD VVIADKFAPD ANSKVVPASA IPDGWMGLDI GPDSVKSFSE ALGTTKTIIW NGPMGVFEFD
KFAVGTEAIA KKLADLSQNG VTTIIGGGDS VAAVEKVGVA NVMSHISTGG GASLELLEGK ELPGVLALDE ATPVPV*