VIGGS:GBrowse

Vigan.07G207400.01

Basic Information:

Name:	Vigan.07G207400.01 Multiple alignment Variant Information
Position:	Chr07:28641518..28645512 (- strand)
Length:	3995

Functional Information:

Description:	Similar to Phosphoglycerate kinase. [I1MJC7, Glycine max]
GO:	Biological Process: glycolysis (GO:0006096)
GO:	Molecular Function: phosphoglycerate kinase activity (GO:0004618)
InterPro:	Phosphoglycerate kinase (IPR001576)
	Phosphoglycerate kinase, N-terminal (IPR015824)
	Phosphoglycerate kinase, C-terminal (IPR015901)
	Phosphoglycerate kinase, conserved site (IPR015911)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:270.42,358.86,370.79,175.89,475.40,618.41,408.70,255.22
Arabidopsis thaliana homolog:	AT1G56190.1, AT1G79550.1, AT3G12780.1

Automatic updates:

Name:	NM_001354838 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max phosphoglycerate kinase (LOC100796458), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:28641518..28641890 (- strand)
Length:	373
Type:	three_prime_UTR

Position:	Chr07:28641891..28642085 (- strand)
Length:	195
Type:	CDS

Position:	Chr07:28643301..28643459 (- strand)
Length:	159
Type:	CDS

Position:	Chr07:28643684..28644001 (- strand)
Length:	318
Type:	CDS

Position:	Chr07:28644097..28644357 (- strand)
Length:	261
Type:	CDS

Position:	Chr07:28644456..28644533 (- strand)
Length:	78
Type:	CDS

Position:	Chr07:28645195..28645389 (- strand)
Length:	195
Type:	CDS

Position:	Chr07:28645390..28645512 (- strand)
Length:	123
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G207400.01
CTGAGATTTC AACCTTACTT TTCGTGAGTT TCGCCCTCAA AGTTTGATTC TTTTTCCGGT TTCCTCTTCA GGGTTCTGAT
CCCTTTCTGG TTTCGGATTT GCGCTTGTGC AGATTTAAGG AGAATGGCTA CGAAGAGGAG CGTGGGAACT TTGAAGGAGG
CTGATTTGAA GGGGAAAAGG GTGTTCGTTA GAGTCGATCT GAACGTGCCT TTGGATGATG ACTTAAAGAT CACCGATGAC
ACTAGAATCC GTGCTGCAGT TCCCACCATC AAGTACTTGA CTGGTTATGG TGCCAAAGTG ATCCTCTCTA GCCATTTGGG
ACGTCCGAAA GGTGTTACAC CTAAATACAG TTTGAAGCCT CTTGTGCCAA GGCTTTCTCA ACTTCTAGAA CTTGAGGTCA
AGATTGCAAA TGACAGTATT GGGGAGGAAG TTGAGAAGTT GGTTGCAGGA CTTCCAGAAG GTGGTGTTTT GCTTCTAGAG
AATGTTAGAT TCTACAAAGA GGAAGAAAAG AATGATCCTG AGTTTGCAAA GAAGCTGGCT TCTCTTGCTG ATATCTATGT
AAATGATGCA TTTGGCACTG CCCACAGAGC TCATGCTTCC ACAGAAGGAG TGGCCAAATA TTTGAAGCCT TCTGTTGCAG
GATTCCTTAT GCAGAAGGAA CTTGATTATC TAGTTGGAGC CGTGTCTAAC CCCAAGAAGC CATTTGCTGC TATTGTGGGT
GGGTCAAAGG TGTCTTCCAA GATTGGAGTT ATTGAATCCT TGTTGGAGAA AGTTAATATT CTTTTGCTTG GTGGAGGAAT
GATCTTTACC TTTTACAAGG CTCAGGGTCA TTCCGTTGGG TCATCTCTTG TGGAAGAAGA TAAACTAGAC CTTGCAACTT
CACTTCTTGA AAAGGCCAAG GCTAAAGGGG TTTCTTTGTT GCTTCCAACT GATGTGGTCA TAGCAGACAA GTTTTCTGCT
GATGCTAACA GCAAGATTGT TCCAGCCTCA AGCATTCCCG ATGGATGGAT GGGATTGGAT ATTGGTCCTG ATTCCATCAA
GACATTTAGT GAAGCATTGG ATACCACCCA AACTATCATT TGGAATGGAC CAATGGGCGT TTTTGAGTTT GAAAAGTTTG
CCGCAGGAAC AGAGGCTATA GCCAAGAAAC TGGCAGAGCT TAGTGGGAAG GGAGTAACAA CCATCATTGG AGGAGGTGAC
TCTGTGGCTG CTGTGGAGAA GGTTGGACTT GCAGATAAGA TGAGCCACAT CTCCACTGGT GGTGGTGCCA GCTTAGAGCT
TCTTGAGGGG AAGCAACTCC CTGGTGTCCT TGCTCTTGAT GATGCTTGAG CAAATTCCTT TGAAGTTTAT GCTTTTATTG
TTACATTGAG AGCTGTAACT CATGTAGAGG CTTAATAGAT GATAGGTTTC AAAATAAGAG GGTTTTGTGG CATTTATGTT
GCCGAATTGA GCTTTATTGT AGTTCTTGTA CAATGTCCAT TTCCGAAGGA GTTTCCTTTT GTTATGTTCC TTTGGTTCTC
AGTGTTGTTT TGGGTTTGCT TCCAAATTGT TATTTTTAAT TAGAAATTTA TCTGCATGAA ATGTCTTGGC TGGTTTGTAG
TTTATGCTAT TATTATGGAT GAGTTCCAGC AACTTAGGAT AAAAAGAAAA CTTGTGTGGG GGTTGTATAT TATGACAAAG
AATATTTTAA TTGGATACAA GG

[show][hide][copy]CDS

>Vigan.07G207400.01
ATGGCTACGA AGAGGAGCGT GGGAACTTTG AAGGAGGCTG ATTTGAAGGG GAAAAGGGTG TTCGTTAGAG TCGATCTGAA
CGTGCCTTTG GATGATGACT TAAAGATCAC CGATGACACT AGAATCCGTG CTGCAGTTCC CACCATCAAG TACTTGACTG
GTTATGGTGC CAAAGTGATC CTCTCTAGCC ATTTGGGACG TCCGAAAGGT GTTACACCTA AATACAGTTT GAAGCCTCTT
GTGCCAAGGC TTTCTCAACT TCTAGAACTT GAGGTCAAGA TTGCAAATGA CAGTATTGGG GAGGAAGTTG AGAAGTTGGT
TGCAGGACTT CCAGAAGGTG GTGTTTTGCT TCTAGAGAAT GTTAGATTCT ACAAAGAGGA AGAAAAGAAT GATCCTGAGT
TTGCAAAGAA GCTGGCTTCT CTTGCTGATA TCTATGTAAA TGATGCATTT GGCACTGCCC ACAGAGCTCA TGCTTCCACA
GAAGGAGTGG CCAAATATTT GAAGCCTTCT GTTGCAGGAT TCCTTATGCA GAAGGAACTT GATTATCTAG TTGGAGCCGT
GTCTAACCCC AAGAAGCCAT TTGCTGCTAT TGTGGGTGGG TCAAAGGTGT CTTCCAAGAT TGGAGTTATT GAATCCTTGT
TGGAGAAAGT TAATATTCTT TTGCTTGGTG GAGGAATGAT CTTTACCTTT TACAAGGCTC AGGGTCATTC CGTTGGGTCA
TCTCTTGTGG AAGAAGATAA ACTAGACCTT GCAACTTCAC TTCTTGAAAA GGCCAAGGCT AAAGGGGTTT CTTTGTTGCT
TCCAACTGAT GTGGTCATAG CAGACAAGTT TTCTGCTGAT GCTAACAGCA AGATTGTTCC AGCCTCAAGC ATTCCCGATG
GATGGATGGG ATTGGATATT GGTCCTGATT CCATCAAGAC ATTTAGTGAA GCATTGGATA CCACCCAAAC TATCATTTGG
AATGGACCAA TGGGCGTTTT TGAGTTTGAA AAGTTTGCCG CAGGAACAGA GGCTATAGCC AAGAAACTGG CAGAGCTTAG
TGGGAAGGGA GTAACAACCA TCATTGGAGG AGGTGACTCT GTGGCTGCTG TGGAGAAGGT TGGACTTGCA GATAAGATGA
GCCACATCTC CACTGGTGGT GGTGCCAGCT TAGAGCTTCT TGAGGGGAAG CAACTCCCTG GTGTCCTTGC TCTTGATGAT
GCTTGA

[show][hide][copy]PROTEIN

>Vigan.07G207400.01
MATKRSVGTL KEADLKGKRV FVRVDLNVPL DDDLKITDDT RIRAAVPTIK YLTGYGAKVI LSSHLGRPKG VTPKYSLKPL
VPRLSQLLEL EVKIANDSIG EEVEKLVAGL PEGGVLLLEN VRFYKEEEKN DPEFAKKLAS LADIYVNDAF GTAHRAHAST
EGVAKYLKPS VAGFLMQKEL DYLVGAVSNP KKPFAAIVGG SKVSSKIGVI ESLLEKVNIL LLGGGMIFTF YKAQGHSVGS
SLVEEDKLDL ATSLLEKAKA KGVSLLLPTD VVIADKFSAD ANSKIVPASS IPDGWMGLDI GPDSIKTFSE ALDTTQTIIW
NGPMGVFEFE KFAAGTEAIA KKLAELSGKG VTTIIGGGDS VAAVEKVGLA DKMSHISTGG GASLELLEGK QLPGVLALDD
A*