GBrowse Details

Vigan.07G213500.01

Basic Information:
Name: Vigan.07G213500.01
Multiple alignment
Variant Information
Position: Chr07:29427179..29430585 (- strand)
Length: 3407
Functional Information:
Description: Similar to Uncharacterized protein. [Q53B73, Glycine max]
GO: Biological Process: flavonoid biosynthetic process (GO:0009813)
Molecular Function: intramolecular lyase activity (GO:0016872)
Molecular Function: chalcone isomerase activity (GO:0045430)
InterPro: Chalcone isomerase (IPR016087)
Chalcone isomerase, 3-layer sandwich (IPR016088)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.36,4.36,15.71,9.37,1.34,4.77,1.97,7.77
Arabidopsis thaliana homolog: AT1G53520.1
Automatic updates:
Name: NM_001251461 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chalcone isomerase 3A1 (CHI3A1), mRNA.
PubMed ID: 25385351 NCBI(pubmed)
15778463 NCBI(pubmed)
Status: Known Variant
Name: NM_001364453 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max chalcone isomerase (CHI3A2), mRNA.
PubMed ID: 25385351 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:29427179..29427414 (- strand)
Length: 236
Type: three_prime_UTR
Position: Chr07:29427415..29427573 (- strand)
Length: 159
Type: CDS
Position: Chr07:29428051..29428265 (- strand)
Length: 215
Type: CDS
Position: Chr07:29428355..29428510 (- strand)
Length: 156
Type: CDS
Position: Chr07:29428878..29428979 (- strand)
Length: 102
Type: CDS
Position: Chr07:29430202..29430415 (- strand)
Length: 214
Type: CDS
Position: Chr07:29430416..29430585 (- strand)
Length: 170
Type: five_prime_UTR


>Vigan.07G213500.01
CTCCAACAAG ATGACGGTTA GATTATGTCG GCGGAAAACC GAAGTGAGAG TACTTCTGTT CAGTTCAGAT TGCTTTGATC
TTAGTATATA CATATATTAT TAATCCTTTC AAATATTTTA TTACCAAACA TCGTGGTTGA ATATACACAA CACAATCCAA
CCTTAAAAAG ATGCTTGGAG CTGTAGCAGC TTCCACAGCA CTATGCTTTT CACCATCCAC GCACCCCACA AGAACTTTTG
TTCACAGAGG AGTCTCAAAT TCAACATTGC CATTGAGCAA CCATGGCCAC TCTTTCTCAC TCTTATCATC CACCCCTATG
CATTTCTCAT CACACAGCAG TAGAAGACAA CCCCTTTTCC TTGCACAAGC TGCTTCATCT TCAGCTGCAA ATGCTGAATA
CGTGGAGGAG CCAGCAACAA AAGTGAAATT CCAGACATGT TTGAATTTTC CGGGTTGCTC AAATTCATTA ACTTTGTTTG
GAGCTGGATA CAGAGAGAAA GTTTTTGCAA TTATTGGTGT TAAGGTCTAT GCTGCAGGTT TGTATCTAGA TCAATCTATT
ACTCCTGAAT TGAATGCTTG GAAAGGGCTA TCAAAAGATG CTATTCAGGG GAATTCTTCC TTGTTCCAGA CCATTTTCCA
ATCTTCCTTT GAGAAATCAT TGCAAATTAT TCTTGTGAGA GATGTTGATG GTCAAACATT TTGGGATGCA TTAAGTGATG
CCATAGCTCC AAGAATTCCA GCATCCACAT CTGTAGATGA AACTGCTTTG ACCACTTTCC GTGGTGTCTT TCTAGATCGC
CCTCTTAAGA AAGGAACTTT CATACTTCTG ACTTGGTTGA ATCCCACCAA ATTGCTTGTT TCTGTCTCCC CAAACGGGTT
TCCATCTACT GTAGATGCTA CAATTGAATC TGCAAATGTG GCTTCTGCCC TTTTTAATGT ATTCCTTGGA GATAATCCTG
TTTCTCACTC CTTGAAATCT TCAGTGGCTG AAGGCTTGTC AAAAGTACTC AAATAGAAAA GTTTTGTGTC TATTGAGAAA
GTTCCATGCA TCAATCCTTA AATTATTGCT GTAACCCATA TTCTACTGAT GTCTGAGTAA GTATGCTTCA TGTTCTACTG
ATGTATGTCT AGTAGTGTAC ACATGGAAGC TGTTACTTAG TTCCGGTGGT TATCTCTAGT CTTTTAAAAT AAATTGTTTT
GCCATTACTA TATACTCTTT AAATCAATTC TGATATACTA TTTTTCCTAG GA

>Vigan.07G213500.01
ATGCTTGGAG CTGTAGCAGC TTCCACAGCA CTATGCTTTT CACCATCCAC GCACCCCACA AGAACTTTTG TTCACAGAGG
AGTCTCAAAT TCAACATTGC CATTGAGCAA CCATGGCCAC TCTTTCTCAC TCTTATCATC CACCCCTATG CATTTCTCAT
CACACAGCAG TAGAAGACAA CCCCTTTTCC TTGCACAAGC TGCTTCATCT TCAGCTGCAA ATGCTGAATA CGTGGAGGAG
CCAGCAACAA AAGTGAAATT CCAGACATGT TTGAATTTTC CGGGTTGCTC AAATTCATTA ACTTTGTTTG GAGCTGGATA
CAGAGAGAAA GTTTTTGCAA TTATTGGTGT TAAGGTCTAT GCTGCAGGTT TGTATCTAGA TCAATCTATT ACTCCTGAAT
TGAATGCTTG GAAAGGGCTA TCAAAAGATG CTATTCAGGG GAATTCTTCC TTGTTCCAGA CCATTTTCCA ATCTTCCTTT
GAGAAATCAT TGCAAATTAT TCTTGTGAGA GATGTTGATG GTCAAACATT TTGGGATGCA TTAAGTGATG CCATAGCTCC
AAGAATTCCA GCATCCACAT CTGTAGATGA AACTGCTTTG ACCACTTTCC GTGGTGTCTT TCTAGATCGC CCTCTTAAGA
AAGGAACTTT CATACTTCTG ACTTGGTTGA ATCCCACCAA ATTGCTTGTT TCTGTCTCCC CAAACGGGTT TCCATCTACT
GTAGATGCTA CAATTGAATC TGCAAATGTG GCTTCTGCCC TTTTTAATGT ATTCCTTGGA GATAATCCTG TTTCTCACTC
CTTGAAATCT TCAGTGGCTG AAGGCTTGTC AAAAGTACTC AAATAG

>Vigan.07G213500.01
MLGAVAASTA LCFSPSTHPT RTFVHRGVSN STLPLSNHGH SFSLLSSTPM HFSSHSSRRQ PLFLAQAASS SAANAEYVEE
PATKVKFQTC LNFPGCSNSL TLFGAGYREK VFAIIGVKVY AAGLYLDQSI TPELNAWKGL SKDAIQGNSS LFQTIFQSSF
EKSLQIILVR DVDGQTFWDA LSDAIAPRIP ASTSVDETAL TTFRGVFLDR PLKKGTFILL TWLNPTKLLV SVSPNGFPST
VDATIESANV ASALFNVFLG DNPVSHSLKS SVAEGLSKVL K*