GBrowse Details

Vigan.07G217000.01

Basic Information:
Name: Vigan.07G217000.01
Multiple alignment
Variant Information
Position: Chr07:29730787..29733069 (+ strand)
Length: 2283
Functional Information:
Description: Similar to Gibberellin 2-oxidase. [Q4W8C3, Phaseolus angularis]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Isopenicillin N synthase (IPR002283)
Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:430.01,47.68,1.45,0.54,0.04,57.97,0.85,0.65
Automatic updates:
Name: NM_001255629 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max gibberellin 2-beta-dioxygenase 6 (GA2OX6), mRNA.
PubMed ID: 23029105 NCBI(pubmed)
21056641 NCBI(pubmed)
Status: Known Variant
Name: NM_001329823 NCBI(nuccore)
Organism: Vigna angularis
Description: Vigna angularis gibberellin 2-beta-dioxygenase 1-like (LOC108332455), mRNA.
PubMed ID: 16116277 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr07:29730787..29731115 (+ strand)
Length: 329
Type: five_prime_UTR
Position: Chr07:29731116..29731504 (+ strand)
Length: 389
Type: CDS
Position: Chr07:29731615..29731960 (+ strand)
Length: 346
Type: CDS
Position: Chr07:29732626..29732874 (+ strand)
Length: 249
Type: CDS
Position: Chr07:29732875..29733069 (+ strand)
Length: 195
Type: three_prime_UTR


>Vigan.07G217000.01
ATAATATTTA AAAAACTAAT AATTTTTAAC AGATTTTTAC ATAATTAAAT ATATTATTCT ATAGACCTGC TCAATGGACA
TGATTATCTA CTAAGATCAC ATGATGTCTC CAATGAATCA TGTTTGTGTT TCTTTTTCAA TGCCCCCTGA GCTTTTGGGT
ATAAATAGCC TATGACCAAA CCGTTCTTCT CACAACTCAA ACTCTCTTCT TCTAGTTCTA TCTCTCTTTC ACATTATCAC
CGACTCTGCA AAACCTCTTC ATCTTCACTT TCTTCTCCCT CTCATTTGGC ACCTAAAGCA AAACAACTTG AGAGCAATCT
GCAAGAAAAA TGGCATCGTT GTCCAAAACA ACAACAGAGC AATACTCCTA CATCAAGAAC CGCATGGCAT CCACATTCGC
CTCCACAATT CCCATAGTCG ACCTTTCCAA ACCTGATGCA AAGACCCTCA TAGTGAATGC TTGTGAGGAG TTTGGATTCT
TCAAAGTCAT CAACCATGGA GTTCCCATGG AAGCTATATC CCGATTGGAA ACTGAGGCCC TCAAGTTCTT CTCTTTGCCA
CTCAATGAGA AGGAAAAAGC AGGGCCTCCT AATCCATTTG GGTATGGTAG CAAGAGGATT GGACACAATG GTGATGTTGG
TTGGGTTGAG TATCTTCTTC TAAACAACAA TCAAGAACAC GATTTTTCTC TCTATGGTAA AAATCACGAG AAATTCAGGT
GTCTGTTGAA CAGCTACATG TGTTCTGTGA AGAAAATGGC TTGTGATATT CTTGAGCTGA TGGCAGAAGG GCTGAAGATT
CAGCAGAAGA ATGTGTTCAG CAAGCTTCTG AGGGATAAAG AAAGTGACTC TGTTTTCAGG GTGAATCATT ATCCTGCTTG
CCCTGAACTT GCTGTGAATG GTGAGAACAT GATTGGATTT GGAGAACACA CAGACCCACA AATCATATCT CTGCTTAGGT
CTAACAACAC TTCAGGCCTT CAAATTTATC TCAGAGATGG AAGCTGGATT TCAGTCCCAC CCGATCACAA CTCCTTCTTC
ATCAATGTTG GAGATTCTCT TCAGGTTATG ACTAATGGAC GGTTTCGGAG TGTGAGACAC AGGGTTTTAG CAAATGGATT
CAAGTCCAGG CTCTCAATGA TTTACTTTGG AGGTCCACCT TTGAGTGAGA AAATAGCACC GTTGCCTTCT CTCATGAAAG
GAAAAGAAAG CCTATACAAA GAGTTTACGT GGTTCGAGTA CAAGAATTCA ACTTATGGTT CAAGGTTGGC TGACAATAGG
CTTGGACATT TTGAGAGAAT TGCAGCTTCA TAATATGCAA GAGGTGTATG AGAGTACTTG TCAATACAAA ATGGGGCTGG
GAGGTTCCAG ATTTATACTA TAAATGGTTT TTACCTTTCT TTTTTAGTTT TGCTACTTTA AGGCTTTTTC TTAACCACAA
TACTTCATAG ATAGGACAAC ATATATACCC CTTTTGCTTC AACACTAGTG AATCATATCT GGTGCTGT

>Vigan.07G217000.01
ATGGCATCGT TGTCCAAAAC AACAACAGAG CAATACTCCT ACATCAAGAA CCGCATGGCA TCCACATTCG CCTCCACAAT
TCCCATAGTC GACCTTTCCA AACCTGATGC AAAGACCCTC ATAGTGAATG CTTGTGAGGA GTTTGGATTC TTCAAAGTCA
TCAACCATGG AGTTCCCATG GAAGCTATAT CCCGATTGGA AACTGAGGCC CTCAAGTTCT TCTCTTTGCC ACTCAATGAG
AAGGAAAAAG CAGGGCCTCC TAATCCATTT GGGTATGGTA GCAAGAGGAT TGGACACAAT GGTGATGTTG GTTGGGTTGA
GTATCTTCTT CTAAACAACA ATCAAGAACA CGATTTTTCT CTCTATGGTA AAAATCACGA GAAATTCAGG TGTCTGTTGA
ACAGCTACAT GTGTTCTGTG AAGAAAATGG CTTGTGATAT TCTTGAGCTG ATGGCAGAAG GGCTGAAGAT TCAGCAGAAG
AATGTGTTCA GCAAGCTTCT GAGGGATAAA GAAAGTGACT CTGTTTTCAG GGTGAATCAT TATCCTGCTT GCCCTGAACT
TGCTGTGAAT GGTGAGAACA TGATTGGATT TGGAGAACAC ACAGACCCAC AAATCATATC TCTGCTTAGG TCTAACAACA
CTTCAGGCCT TCAAATTTAT CTCAGAGATG GAAGCTGGAT TTCAGTCCCA CCCGATCACA ACTCCTTCTT CATCAATGTT
GGAGATTCTC TTCAGGTTAT GACTAATGGA CGGTTTCGGA GTGTGAGACA CAGGGTTTTA GCAAATGGAT TCAAGTCCAG
GCTCTCAATG ATTTACTTTG GAGGTCCACC TTTGAGTGAG AAAATAGCAC CGTTGCCTTC TCTCATGAAA GGAAAAGAAA
GCCTATACAA AGAGTTTACG TGGTTCGAGT ACAAGAATTC AACTTATGGT TCAAGGTTGG CTGACAATAG GCTTGGACAT
TTTGAGAGAA TTGCAGCTTC ATAA

>Vigan.07G217000.01
MASLSKTTTE QYSYIKNRMA STFASTIPIV DLSKPDAKTL IVNACEEFGF FKVINHGVPM EAISRLETEA LKFFSLPLNE
KEKAGPPNPF GYGSKRIGHN GDVGWVEYLL LNNNQEHDFS LYGKNHEKFR CLLNSYMCSV KKMACDILEL MAEGLKIQQK
NVFSKLLRDK ESDSVFRVNH YPACPELAVN GENMIGFGEH TDPQIISLLR SNNTSGLQIY LRDGSWISVP PDHNSFFINV
GDSLQVMTNG RFRSVRHRVL ANGFKSRLSM IYFGGPPLSE KIAPLPSLMK GKESLYKEFT WFEYKNSTYG SRLADNRLGH
FERIAAS*