GBrowse Details

Vigan.07G217500.01

Basic Information:
Name: Vigan.07G217500.01
Multiple alignment
Variant Information
Position: Chr07:29783224..29785961 (- strand)
Length: 2738
Functional Information:
Description: Similar to feruloyl CoA ortho-hydroxylase 1-like. [XP_004488807.1, Cicer arietinum]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro: Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Non-haem dioxygenase N-terminal domain (IPR026992)
Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.45,0.00,0.05,0.00,0.06,1.62,268.45,0.00
Arabidopsis thaliana homolog: AT3G12900.1
Automatic updates:
Name: NM_001255509 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 1-aminocyclopropane-1-carboxylate oxidase homolog 11-like (LOC100803722), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:29783224..29783535 (- strand)
Length: 312
Type: three_prime_UTR
Position: Chr07:29783536..29783781 (- strand)
Length: 246
Type: CDS
Position: Chr07:29784710..29785052 (- strand)
Length: 343
Type: CDS
Position: Chr07:29785397..29785896 (- strand)
Length: 500
Type: CDS
Position: Chr07:29785897..29785961 (- strand)
Length: 65
Type: five_prime_UTR


>Vigan.07G217500.01
GATCATAGCA ATTTCTACTG AACTTTTGAT TTGCCAAAAC CATAGTCTAA AGCAAATTGC ACTGCATGGC TCTAAGATCC
AACTCCTCAA ATTCGCTGTA TGATTTTGTG GTGAGAGCCG GCAATGGTGT GAAAGGTTTG GTAGACTCTG GTGTGTCAGA
GGTGCCAGAG AGGTACATAC AACCTCCAGG CGAACGAATC AACAAGCATG ATTCAAGGGC ATGTGATGCT CCACCCATTG
ACTTGTCAAA ACTGAATGGA GAAGAGCATG AGAAAGTGGT GGATGAGATT GCTAGAGCAG CTGAAACTCT TGGTTTCTTT
CAGGTGGTGA ATCATGGGGT GCCTTTGGAG TTGCTGGAAT CGCTTAAAGA TGCAGCACAC ACATTCTTCA GTTTGCCACC
AGAAAAGAAA GCTGTTTATT GCACTGGGGT GAGCCCTAGC CCCAGGGTAA AATATGGGAC TAGCTTTGTG CCAGAGAAAG
AGAAGGCTTT GGAGTGGAAA GACTATATCA GTATGACATT TAACAGTGAT GAAGAAGCTC TTCAGTGTTG GCCTAATCAG
TGCAAGGAAG TTGCACTTGA GTATTTGAAG TTATCAACTA AGATGGTTAG AGACATTGTG GAAGCGTTGA TCGGTAAGCT
CGGAGTTACA CTAAAAGATT CAGAAATGGA AGGCCTTCTT GGAATGAAGA TGGTTAACAT GAACTACTAT CCAGCGTGCC
CAAATCCAGA GCTTACAGTG GGTGTTGGGC GTCACTCTGA TATGGGAGCT ATCACAGTAC TGCTCCAAGA TGGCATTGGA
GGCTTGTATG TCAAGGTGGA CCAACAAAAT CCTGCTGACA AAGGACAGTG GTTGGAAATT CCCCCAATCC CTGGAGCTCT
TGTAATTAAT ATTGGCGATA CTTTACAGAT ACTGAGCAAT GGGAAGTATA AGAGTGCTGA ACACCGAGTA AGGACAACTA
GCAGCCAATC CAGGGTATCG GTTCCGGTGT TTACAATGCC AATAGCTACA GAAAGAATAG GTCCATTGCC AGAGGTGGTG
GAGAAAGATG GGTTGGCCCG CTACAGAGAA GTTGTGCTCC AGGATTACAT GAACAATTTC TTTGGGAATG CTCATGCTGG
AAAAAACTCT CTTGATTTTG CAAGGATCAA CTAGTATAAT AATAAGTTGT AATTGATGAG ATACGTCATA ATACGTTTTG
CACTTATTTA CTACTTTGTC ATCGTGTTAA ATATTATGAC TGATGTCTAT ATGTCATAAT AGATTTTTTT TTATTACAAA
AATACTATCG GTCAACCTTT TATGATGGGT GGTTTTTACC TGTCATAATA AATTGTTATA GAATGTTACT TTTCTACTGG
TGTGTGTTTC CGTCTCCATT TCTTGTTTCA GGAATAAAAA AGAGTATGTG TGGGTCCTTC TTCATTTCTT GTTTCAGCAA
TAAAACATTC CGTTATTTTC TATTAA

>Vigan.07G217500.01
ATGGCTCTAA GATCCAACTC CTCAAATTCG CTGTATGATT TTGTGGTGAG AGCCGGCAAT GGTGTGAAAG GTTTGGTAGA
CTCTGGTGTG TCAGAGGTGC CAGAGAGGTA CATACAACCT CCAGGCGAAC GAATCAACAA GCATGATTCA AGGGCATGTG
ATGCTCCACC CATTGACTTG TCAAAACTGA ATGGAGAAGA GCATGAGAAA GTGGTGGATG AGATTGCTAG AGCAGCTGAA
ACTCTTGGTT TCTTTCAGGT GGTGAATCAT GGGGTGCCTT TGGAGTTGCT GGAATCGCTT AAAGATGCAG CACACACATT
CTTCAGTTTG CCACCAGAAA AGAAAGCTGT TTATTGCACT GGGGTGAGCC CTAGCCCCAG GGTAAAATAT GGGACTAGCT
TTGTGCCAGA GAAAGAGAAG GCTTTGGAGT GGAAAGACTA TATCAGTATG ACATTTAACA GTGATGAAGA AGCTCTTCAG
TGTTGGCCTA ATCAGTGCAA GGAAGTTGCA CTTGAGTATT TGAAGTTATC AACTAAGATG GTTAGAGACA TTGTGGAAGC
GTTGATCGGT AAGCTCGGAG TTACACTAAA AGATTCAGAA ATGGAAGGCC TTCTTGGAAT GAAGATGGTT AACATGAACT
ACTATCCAGC GTGCCCAAAT CCAGAGCTTA CAGTGGGTGT TGGGCGTCAC TCTGATATGG GAGCTATCAC AGTACTGCTC
CAAGATGGCA TTGGAGGCTT GTATGTCAAG GTGGACCAAC AAAATCCTGC TGACAAAGGA CAGTGGTTGG AAATTCCCCC
AATCCCTGGA GCTCTTGTAA TTAATATTGG CGATACTTTA CAGATACTGA GCAATGGGAA GTATAAGAGT GCTGAACACC
GAGTAAGGAC AACTAGCAGC CAATCCAGGG TATCGGTTCC GGTGTTTACA ATGCCAATAG CTACAGAAAG AATAGGTCCA
TTGCCAGAGG TGGTGGAGAA AGATGGGTTG GCCCGCTACA GAGAAGTTGT GCTCCAGGAT TACATGAACA ATTTCTTTGG
GAATGCTCAT GCTGGAAAAA ACTCTCTTGA TTTTGCAAGG ATCAACTAG

>Vigan.07G217500.01
MALRSNSSNS LYDFVVRAGN GVKGLVDSGV SEVPERYIQP PGERINKHDS RACDAPPIDL SKLNGEEHEK VVDEIARAAE
TLGFFQVVNH GVPLELLESL KDAAHTFFSL PPEKKAVYCT GVSPSPRVKY GTSFVPEKEK ALEWKDYISM TFNSDEEALQ
CWPNQCKEVA LEYLKLSTKM VRDIVEALIG KLGVTLKDSE MEGLLGMKMV NMNYYPACPN PELTVGVGRH SDMGAITVLL
QDGIGGLYVK VDQQNPADKG QWLEIPPIPG ALVINIGDTL QILSNGKYKS AEHRVRTTSS QSRVSVPVFT MPIATERIGP
LPEVVEKDGL ARYREVVLQD YMNNFFGNAH AGKNSLDFAR IN*