GBrowse Details

Vigan.07G217600.01

Basic Information:
Name: Vigan.07G217600.01
Multiple alignment
Variant Information
Position: Chr07:29792240..29803657 (+ strand)
Length: 11418
Functional Information:
Description: Similar to Uncharacterized protein. [I1MM44, Glycine max]
GO: Biological Process: glucose metabolic process (GO:0006006)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)
Molecular Function: NADP binding (GO:0050661)
Molecular Function: NAD binding (GO:0051287)
InterPro: Glyceraldehyde-3-phosphate dehydrogenase, type I (IPR006424)
NAD(P)-binding domain (IPR016040)
Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain (IPR020828)
Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain (IPR020829)
Glyceraldehyde 3-phosphate dehydrogenase, active site (IPR020830)
Glyceraldehyde/Erythrose phosphate dehydrogenase family (IPR020831)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.94,38.12,60.63,18.21,240.32,67.84,63.46,37.08
Arabidopsis thaliana homolog: AT1G16300.1, AT1G79530.1
Automatic updates:
Name: NM_001255925 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glyceraldehyde-3-phosphate dehydrogenase GAPCP1, chloroplastic (LOC100804853), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:29792240..29792537 (+ strand)
Length: 298
Type: five_prime_UTR
Position: Chr07:29792538..29792600 (+ strand)
Length: 63
Type: CDS
Position: Chr07:29793377..29793471 (+ strand)
Length: 95
Type: CDS
Position: Chr07:29793585..29793652 (+ strand)
Length: 68
Type: CDS
Position: Chr07:29793742..29793780 (+ strand)
Length: 39
Type: CDS
Position: Chr07:29797218..29797318 (+ strand)
Length: 101
Type: CDS
Position: Chr07:29798445..29798557 (+ strand)
Length: 113
Type: CDS
Position: Chr07:29798641..29798740 (+ strand)
Length: 100
Type: CDS
Position: Chr07:29798840..29798986 (+ strand)
Length: 147
Type: CDS
Position: Chr07:29802167..29802227 (+ strand)
Length: 61
Type: CDS
Position: Chr07:29802340..29802437 (+ strand)
Length: 98
Type: CDS
Position: Chr07:29802516..29802658 (+ strand)
Length: 143
Type: CDS
Position: Chr07:29802758..29802841 (+ strand)
Length: 84
Type: CDS
Position: Chr07:29803069..29803158 (+ strand)
Length: 90
Type: CDS
Position: Chr07:29803272..29803326 (+ strand)
Length: 55
Type: CDS
Position: Chr07:29803327..29803657 (+ strand)
Length: 331
Type: three_prime_UTR


>Vigan.07G217600.01
GTTTTCTTCC TCCGTATCTT GGCTTCTCTT GTAGGCTAAT AGTTGTAGAC TCTCCCGCAC GTGATCACCC ACACCTTTTC
AAAAAGGGCG TGATACAGTG ACGTTGAAAC TTGAGAGGGA AAGAGTTGTT GGCAGCATTC CATAAGAAGC TCCGTAGGGT
GGTGCGAATA AAATAAAAAG AAAACGAGAA AAACAGTGCC ACATTCGCAT TCTTCTTCAT TCTTATTGTC CTTTGCTTGG
TGCAGAAACC ATTCTTACAT TTTCTAGGGT TTGGTTTTTG CTCTCTTCGC CTTCTCCAAT GGCCGCTTCG TCTTTGCTCA
GATCCGCGTT TCTCGCACCT TCCTCCTGCG ATCGTTCCAA GGTATTTAGC AACGCCTCGA GTTGTAATGT GAAATCTATG
GGATTACAGA GTAGCATATT TGGTAATTCA ATTCAATGTG ACTCATTAGT CTTCCAAAAC TACAATGCTC AGGGGATCCA
GCCTATTAAA TCCACAGCTA CAGAAATCCC TCTCCCCACC CAGCAATCAA GGAGCTCTGG GAAGACAAGA GTTGGAATAA
ATGGTTTTGG TAGAATTGGA AGGTTGGTGC TGCGTGTAGC TACTTCACGA GATGATATTG ATGTTGTTGC AATTAATGAT
CCATTTGTTG ATGCAAAATA TATGGCTTAC ATGTTTAAAT ATGATTCTAC TCATGGTCCA TTCAAGGGGA CCATTAAAAC
TTTGGATGAC TCTACTTTGG AAATTAATGG AAAGCAGGTT AAAGTTGTGA GCAAAAGAGA TCCTGCAGAG ATCCAATGGA
GTGCTTTTGG GGCTGATTAT GTCATTGAGT CATCTGGAGT TTTCACAACT GTGGAAAAAG CTTCATCACA TTTGAAGGCT
GGTGCCAAGA AAGTAATAAT ATCAGCTCCA TCTGCTGATG CTCCAATGTT TGTGGTAGGA GTGAATGAGA AGGCATACCA
CCCAGAAATG GACATTGTTT CTAATGCAAG TTGTACAACA AATTGTCTTG CTCCTCTTGC CAAGGTGGTT CATGAAGAGT
TTGGAATAGT TGAAGGTTTA ATGACAACTG TACATGCAAC CACAGCAACA CAGAAGACTG TAGATGGCCC TTCTATGAAG
GATTGGCGTG GGGGAAGAGG GGCAAGCCAA AATATAATTC CAAGTTCAAC TGGTGCTGCG AAGGCTGTTG GGAAAGTGCT
TCCTGAGTTA AATGGAAAGC TCACTGGGAT GGCATTCCGT GTTCCGACTC CCAATGTTTC TGTGGTGGAC TTGACTTGCC
GGCTTAAGAA GAATGCTTCT TATGAAGATG TTAAATCAGC AATAAAGTAT GCCTCAGAGG GACCACTGAA AGGAATCCTT
GGGTACACAG AAGAGGATGT TGTCTCTAAT GACTTCGTTG GTGATTCAAG GTCAAGTATC TTTGATGCTA AGGCTGGCAT
TGCACTTAGT TCTTCCTTTG TTAAGCTGGT TTCATGGTAT GACAACGAAT GGGGTTACAG CAATCGAGTG TTGGACCTTA
TAGAGCACAT GGCGTTGGTG GGAGCTCAAA ATTGAACACC AATTAGGTTA TTATTGGTAG TGACTTAGGT TCAGATTTTG
GTTTTGATCT GATTTTTATA ATGAGGCTAA ATTATCACAT CGTGTACACC GAAAATAAAA TAAAGAGGAC ATTGTCCTGG
GTCATGCTTT GGGGATTACT ACCAGCATGA ATTTTTAACA ATCTGCCTTT AGAATGATTT GACATTTTAA AGGTGAAGAA
TGATTTATAT TGAGTTGTTC GATAGGTCAT GTTTTGGATT AATACCAGCA TGAATTTTTA ACAATCTGCC TTTGAAAATG
ATTTGACATT TTAAAGGTGA AGAATGTTAT ATTGGCTTGT TCGGAT

>Vigan.07G217600.01
ATGGCCGCTT CGTCTTTGCT CAGATCCGCG TTTCTCGCAC CTTCCTCCTG CGATCGTTCC AAGGTATTTA GCAACGCCTC
GAGTTGTAAT GTGAAATCTA TGGGATTACA GAGTAGCATA TTTGGTAATT CAATTCAATG TGACTCATTA GTCTTCCAAA
ACTACAATGC TCAGGGGATC CAGCCTATTA AATCCACAGC TACAGAAATC CCTCTCCCCA CCCAGCAATC AAGGAGCTCT
GGGAAGACAA GAGTTGGAAT AAATGGTTTT GGTAGAATTG GAAGGTTGGT GCTGCGTGTA GCTACTTCAC GAGATGATAT
TGATGTTGTT GCAATTAATG ATCCATTTGT TGATGCAAAA TATATGGCTT ACATGTTTAA ATATGATTCT ACTCATGGTC
CATTCAAGGG GACCATTAAA ACTTTGGATG ACTCTACTTT GGAAATTAAT GGAAAGCAGG TTAAAGTTGT GAGCAAAAGA
GATCCTGCAG AGATCCAATG GAGTGCTTTT GGGGCTGATT ATGTCATTGA GTCATCTGGA GTTTTCACAA CTGTGGAAAA
AGCTTCATCA CATTTGAAGG CTGGTGCCAA GAAAGTAATA ATATCAGCTC CATCTGCTGA TGCTCCAATG TTTGTGGTAG
GAGTGAATGA GAAGGCATAC CACCCAGAAA TGGACATTGT TTCTAATGCA AGTTGTACAA CAAATTGTCT TGCTCCTCTT
GCCAAGGTGG TTCATGAAGA GTTTGGAATA GTTGAAGGTT TAATGACAAC TGTACATGCA ACCACAGCAA CACAGAAGAC
TGTAGATGGC CCTTCTATGA AGGATTGGCG TGGGGGAAGA GGGGCAAGCC AAAATATAAT TCCAAGTTCA ACTGGTGCTG
CGAAGGCTGT TGGGAAAGTG CTTCCTGAGT TAAATGGAAA GCTCACTGGG ATGGCATTCC GTGTTCCGAC TCCCAATGTT
TCTGTGGTGG ACTTGACTTG CCGGCTTAAG AAGAATGCTT CTTATGAAGA TGTTAAATCA GCAATAAAGT ATGCCTCAGA
GGGACCACTG AAAGGAATCC TTGGGTACAC AGAAGAGGAT GTTGTCTCTA ATGACTTCGT TGGTGATTCA AGGTCAAGTA
TCTTTGATGC TAAGGCTGGC ATTGCACTTA GTTCTTCCTT TGTTAAGCTG GTTTCATGGT ATGACAACGA ATGGGGTTAC
AGCAATCGAG TGTTGGACCT TATAGAGCAC ATGGCGTTGG TGGGAGCTCA AAATTGA

>Vigan.07G217600.01
MAASSLLRSA FLAPSSCDRS KVFSNASSCN VKSMGLQSSI FGNSIQCDSL VFQNYNAQGI QPIKSTATEI PLPTQQSRSS
GKTRVGINGF GRIGRLVLRV ATSRDDIDVV AINDPFVDAK YMAYMFKYDS THGPFKGTIK TLDDSTLEIN GKQVKVVSKR
DPAEIQWSAF GADYVIESSG VFTTVEKASS HLKAGAKKVI ISAPSADAPM FVVGVNEKAY HPEMDIVSNA SCTTNCLAPL
AKVVHEEFGI VEGLMTTVHA TTATQKTVDG PSMKDWRGGR GASQNIIPSS TGAAKAVGKV LPELNGKLTG MAFRVPTPNV
SVVDLTCRLK KNASYEDVKS AIKYASEGPL KGILGYTEED VVSNDFVGDS RSSIFDAKAG IALSSSFVKL VSWYDNEWGY
SNRVLDLIEH MALVGAQN*