GBrowse Details

Vigan.07G221100.01

Basic Information:
Name: Vigan.07G221100.01
Multiple alignment
Variant Information
Position: Chr07:30116084..30120673 (- strand)
Length: 4590
Functional Information:
Description: Similar to Uncharacterized protein. [C6SXX2, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Ubiquitin domain (IPR000626)
Ubiquitin conserved site (IPR019954)
Ubiquitin (IPR019956)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:44.09,36.52,94.38,73.61,101.66,176.65,87.59,90.09
Arabidopsis thaliana homolog: AT1G31340.1
Automatic updates:
Name: NM_001289313 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-NEDD8-like protein RUB1-like (LOC100800163), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:30116084..30116508 (- strand)
Length: 425
Type: three_prime_UTR
Position: Chr07:30116509..30116620 (- strand)
Length: 112
Type: CDS
Position: Chr07:30117194..30117453 (- strand)
Length: 260
Type: CDS
Position: Chr07:30120283..30120375 (- strand)
Length: 93
Type: CDS
Position: Chr07:30120376..30120673 (- strand)
Length: 298
Type: five_prime_UTR


>Vigan.07G221100.01
TATAAATTTA AAATACAAAT AAAAACCAAA TAGTAGAAAA ATTATAGGGT TTCTATAACT CAACTAAATA AGCTTGAAGG
AATGGATAGT GTAAAAGTGT GAAAAAGGTA AGTTCAACAA TTGGAGAGCT TCCAAACACT ATAATTGAAG ATCCAAATCT
CCTTACTGTT TCTGCTAGTC ATCACACAAC AAACATTGCT TACAACCTAC GAACTACAAA TACCCCCTTT CAGAGGCAGA
ATCCAAACAA TCTCTCACTC TCATTTTCTC TCCCACACTC TCTCTCCCAT CCATCAACAT GCAGATCTTC GTCAAGACTT
TGACCGGAAA GACCATCACG CTGGAGGTCG AGAGCAGCGA CACCATTGAC AACGTCAAAG CCAAGATCCA GGACAAGGAA
GGTATCCCTC CTGACCAGCA GAGGTTGATT TTTGCTGGTA AGCAACTGGA AGATGGTCGC ACACTTGCTG ATTATAACAT
ACAAAAGGAA TCTACCCTTC ACTTGGTCTT GAGGCTCAGA GGAGGAACCA TGATTAAAGT GAAGACTTTG ACTGGAAAAG
AAATTGAAAT CGACATTGAG CCAACTGATA CGATTGACCG GATCAAGGAA CGTGTAGAAG AAAAGGAAGG AATTCCACCT
GTGCAGCAGA GACTCATATA TGCAGGTAAG CAGCTTGCTG ACGACAAAAC AGCCAAAGAG TACAACATTG AGGGTGGTTC
AGTACTTCAT TTGGTGCTTG CATTGAGGGG TGGTATTTAT TAATGTAGAT GGATATCAGA ACTTAAAGGC TTGAAAGGAA
GCTTTATACC TGTCCTCTGA AGACATTACT TTTCATTTAT GTGCTTGGTT TTGTAATTGA GGCTACTATT GGTGGTCACT
AACTCGGTAT CTTTCGAACT GTATGCTGTT CAAAACCTTA AGTTGTCCAT TAAAATGGGT ATCTGGACCA ATCATTTATA
ACCGTAGTTT CGAACATGAT TATGTTAAAC ATAATTTCTA GGCCCATTTT CAATCCGTTG CAATATGGGT CAGGAATGGA
TCCATTTTTT CTTTTTGCGT TGGACTGGGT AATCTTCTTT AGATTATATG ATGAAATATA CTTTAAAAGG AAAAATAGTA
TTACAAAGCT AGTAAATCAA GGAAGTTTGT TTACTCAACT ACATGCAACT TTTGAACGAT TGGGTTGT

>Vigan.07G221100.01
ATGCAGATCT TCGTCAAGAC TTTGACCGGA AAGACCATCA CGCTGGAGGT CGAGAGCAGC GACACCATTG ACAACGTCAA
AGCCAAGATC CAGGACAAGG AAGGTATCCC TCCTGACCAG CAGAGGTTGA TTTTTGCTGG TAAGCAACTG GAAGATGGTC
GCACACTTGC TGATTATAAC ATACAAAAGG AATCTACCCT TCACTTGGTC TTGAGGCTCA GAGGAGGAAC CATGATTAAA
GTGAAGACTT TGACTGGAAA AGAAATTGAA ATCGACATTG AGCCAACTGA TACGATTGAC CGGATCAAGG AACGTGTAGA
AGAAAAGGAA GGAATTCCAC CTGTGCAGCA GAGACTCATA TATGCAGGTA AGCAGCTTGC TGACGACAAA ACAGCCAAAG
AGTACAACAT TGAGGGTGGT TCAGTACTTC ATTTGGTGCT TGCATTGAGG GGTGGTATTT ATTAA

>Vigan.07G221100.01
MQIFVKTLTG KTITLEVESS DTIDNVKAKI QDKEGIPPDQ QRLIFAGKQL EDGRTLADYN IQKESTLHLV LRLRGGTMIK
VKTLTGKEIE IDIEPTDTID RIKERVEEKE GIPPVQQRLI YAGKQLADDK TAKEYNIEGG SVLHLVLALR GGIY*