GBrowse Details

Vigan.07G223100.01

Basic Information:
Name: Vigan.07G223100.01
Multiple alignment
Variant Information
Position: Chr07:30316209..30321308 (+ strand)
Length: 5100
Functional Information:
Description: Similar to Uncharacterized protein. [B9U5I2, Glycine max]
GO: Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: DNA binding (GO:0003677)
InterPro: NAC domain (IPR003441)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.69,0.18,7.96,46.34,13.11,1.91,70.77,1.62
Arabidopsis thaliana homolog: AT1G56010.2
Automatic updates:
Name: KT031214 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_61 NAC transcription factor (Glyma08g18470.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: KT031221 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_172 NAC transcription factor (Glyma15g40510.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001248972 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcriptional factor NAC35 (NAC35), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251326 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max NAC domain protein (NAC34), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:30316209..30316833 (+ strand)
Length: 625
Type: five_prime_UTR
Position: Chr07:30316834..30316999 (+ strand)
Length: 166
Type: CDS
Position: Chr07:30319556..30319830 (+ strand)
Length: 275
Type: CDS
Position: Chr07:30320592..30321053 (+ strand)
Length: 462
Type: CDS
Position: Chr07:30321054..30321308 (+ strand)
Length: 255
Type: three_prime_UTR


>Vigan.07G223100.01
GTCATCTCTC ATCACCACTG TGTTCATTTG AGACTGGCTG CTTATGTGCC AACTCTCTAA TTATTATTCT CACAAATTCA
TTTGAGAGTT ATAGTCATCT TGTTCAATTC AAATTTGATG TGGTCTTACT ATATCTCTCT GTTTTAGTGA CATATTTACT
ATACTTTTTT TAACATTATC TATGATATGC AAAATACAAA AAACTTTCCC ATGATTACTG TGTTATTGAA GTTGAATAAA
GTATGTTTGA TAGTGTAAAT TGTGTTGAAT GAGTAATTAG GAAGTGTGTA AAAGTATGCG TTTGTAGTGT TTGTGATAAT
GCGAAGATAA AAATAAGTTG CGAGAGGAAG AAATGAAGGA GTTGGGAGTG ATTGGTTTGT GCACGTCATC ATTCATTGAG
TTGAGACGCA GAACTTAATG ACCATCCTAC CCTTCTTCCA TGCAAACAAT TACATGTTGA CTTAGCCACT TGTGATCCCT
CTCCATTTAT ATATACTCCT TTCTTCTCCT CCTTCCTTTA TTATACTTCT CCAAATTTCT CACTTCAACT TTCAACCTCT
TTTCTCTGTC ATCTTTCTCT TTCTCTTTCT CTTTCTTCTA TCTACACCTG TATTCAAACC AAAACATGAG CAACATAAGC
ATGGTAGAGG CAAAGTTGCC ACCAGGGTTC AGGTTCCATC CAAGAGATGA AGAGCTTGTG TGTGATTACT TGATGAAGAA
GGTCACACAC AATGATTCCC TTCTCATGAT AGATGTTGAC CTTAACAAGT GTGAACCTTG GGATATTCCT GACACAGCAT
GTGTGGGAGG GAAAGAGTGG TATTTCTATA CACAAAGAGA CCGTAAGTAT GCAACAGGAT TACGCACAAA CCGTGCCACT
GCCTCAGGGT ACTGGAAGGC CACAGGGAAG GACAGGCCTA TCCTACGCAA GGGCACCCTT GTTGGCATGA GGAAGACTTT
GGTGTTCTAT CAAGGAAGGG CACCCAAAGG GAGAAAAACT GAGTGGGTGA TGCATGAGTT TCGCATTGAA GGGCCCCATG
GACCTCCTAA AGTTTCTTCT TCTAAGGAAG ACTGGGTTTT GTGTAGAGTG TTCTACAAAA ACAGAGAAGT TTCAGCCAAA
CCTAGCATGG GTAGCTGCTA TGAAGACACA GGCTCTTCAT CTCTTCCTGC ATTAATGGAC TCTTACATTA GTTTTGATCA
AACTCAAGCT CATGCAGATG AGTTTGAGCA AGTGCCCTGC TTCTCCATTT TCTCTCAGAA CCAAGCAAAC CCTATTTTCA
ACCACATGAC AACCATGGAG CCTAAATTAC CTGCGACTGC ATATGGAGGA GGAGCACCGA ATTTGGGTTA CTGCTTAGAC
CCTTTATCCT GTGACAGAAA AGTGTTGAAA GCTGTTTTGA GTCAGATCAC AAAGATGGAA AGGAATCCTC TGAACCAAAG
TCTCAAAGGG TCTCCAAGCT TTGGGGAAGG AAGCTCAGAG AGTTATTTAT CTGAAGTGGG GATGCCTCAC CTTTGGAACA
ATTACTGATG TGGGACTTCA TTCCCCAATG CCACCATGGC AAACAAAAAT TAAAACAAGA AAACAAAAAA TGAAGATGAA
ATTAATCCAT TGTTTGAAGT GATGGTGAGT GCCTATGTTT TTACCTGTGG TGTTTGGCTA TTACTATGAT ACACATCCCT
CCATTATGTG TCCCAATATA TTAGGAAAAT GGGACTTGTA ATTCAAACTT ATAAATATTT GTAGTTAATT CTAGTTAGTG
AATGATTTTT TTTTGTTGCC AAA

>Vigan.07G223100.01
ATGAGCAACA TAAGCATGGT AGAGGCAAAG TTGCCACCAG GGTTCAGGTT CCATCCAAGA GATGAAGAGC TTGTGTGTGA
TTACTTGATG AAGAAGGTCA CACACAATGA TTCCCTTCTC ATGATAGATG TTGACCTTAA CAAGTGTGAA CCTTGGGATA
TTCCTGACAC AGCATGTGTG GGAGGGAAAG AGTGGTATTT CTATACACAA AGAGACCGTA AGTATGCAAC AGGATTACGC
ACAAACCGTG CCACTGCCTC AGGGTACTGG AAGGCCACAG GGAAGGACAG GCCTATCCTA CGCAAGGGCA CCCTTGTTGG
CATGAGGAAG ACTTTGGTGT TCTATCAAGG AAGGGCACCC AAAGGGAGAA AAACTGAGTG GGTGATGCAT GAGTTTCGCA
TTGAAGGGCC CCATGGACCT CCTAAAGTTT CTTCTTCTAA GGAAGACTGG GTTTTGTGTA GAGTGTTCTA CAAAAACAGA
GAAGTTTCAG CCAAACCTAG CATGGGTAGC TGCTATGAAG ACACAGGCTC TTCATCTCTT CCTGCATTAA TGGACTCTTA
CATTAGTTTT GATCAAACTC AAGCTCATGC AGATGAGTTT GAGCAAGTGC CCTGCTTCTC CATTTTCTCT CAGAACCAAG
CAAACCCTAT TTTCAACCAC ATGACAACCA TGGAGCCTAA ATTACCTGCG ACTGCATATG GAGGAGGAGC ACCGAATTTG
GGTTACTGCT TAGACCCTTT ATCCTGTGAC AGAAAAGTGT TGAAAGCTGT TTTGAGTCAG ATCACAAAGA TGGAAAGGAA
TCCTCTGAAC CAAAGTCTCA AAGGGTCTCC AAGCTTTGGG GAAGGAAGCT CAGAGAGTTA TTTATCTGAA GTGGGGATGC
CTCACCTTTG GAACAATTAC TGA

>Vigan.07G223100.01
MSNISMVEAK LPPGFRFHPR DEELVCDYLM KKVTHNDSLL MIDVDLNKCE PWDIPDTACV GGKEWYFYTQ RDRKYATGLR
TNRATASGYW KATGKDRPIL RKGTLVGMRK TLVFYQGRAP KGRKTEWVMH EFRIEGPHGP PKVSSSKEDW VLCRVFYKNR
EVSAKPSMGS CYEDTGSSSL PALMDSYISF DQTQAHADEF EQVPCFSIFS QNQANPIFNH MTTMEPKLPA TAYGGGAPNL
GYCLDPLSCD RKVLKAVLSQ ITKMERNPLN QSLKGSPSFG EGSSESYLSE VGMPHLWNNY *