GBrowse Details

Vigan.07G227800.01

Basic Information:
Name: Vigan.07G227800.01
Multiple alignment
Variant Information
Position: Chr07:30903220..30906911 (+ strand)
Length: 3692
Functional Information:
Description: Similar to Uncharacterized protein. [I1MJN7, Glycine max]
GO: Biological Process: ATP synthesis coupled proton transport (GO:0015986)
Cellular Component: membrane (GO:0016020)
Molecular Function: proton-transporting ATP synthase activity, rotational mechanism (GO:0046933)
InterPro: ATPase, F1 complex, OSCP/delta subunit (IPR000711)
ATPase, F1 complex, OSCP/delta subunit, conserved site (IPR020781)
F1F0 ATP synthase OSCP/delta subunit, N-terminal domain (IPR026015)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:46.54,39.26,155.38,84.41,188.80,190.09,142.56,82.39
Arabidopsis thaliana homolog: AT5G13450.1
Automatic updates:
Name: NM_001249239 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100499796 (LOC100499796), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr07:30903220..30903378 (+ strand)
Length: 159
Type: five_prime_UTR
Position: Chr07:30903379..30903492 (+ strand)
Length: 114
Type: CDS
Position: Chr07:30903650..30903700 (+ strand)
Length: 51
Type: CDS
Position: Chr07:30904089..30904332 (+ strand)
Length: 244
Type: CDS
Position: Chr07:30905828..30905940 (+ strand)
Length: 113
Type: CDS
Position: Chr07:30906250..30906336 (+ strand)
Length: 87
Type: CDS
Position: Chr07:30906432..30906560 (+ strand)
Length: 129
Type: CDS
Position: Chr07:30906561..30906911 (+ strand)
Length: 351
Type: three_prime_UTR


>Vigan.07G227800.01
AAAAAAAAGT AAAAAAATAA AAAGAATAAC TCTTAAAATT TACTGCTGAG TCTTCATTAG CCCTATTCAG ATTCAGTTTC
CCTTTGCCTT TGTTTCTCTT CCAAACTACA GAACCAAACT CGCTCACTGA AACTCGACAA AATTAGGGTT TCTGCAGTGA
TGGCACTCTG CAATCGCGTC AGATCGGGAA TCTCCCTCTT CAACAAATCC ACCTCCCTCA CTTCCCACCG TTCCAATCTC
CAACGATCTC TCGTTGCCCC TTCCATTTCC CTCGCCTCCA GAAATTATGC TAACGTGCCC GGAGAAAAGG ACCAAAAAGT
TAAGGTTCCT TTGGCCTTGT ATGGAGGTTC AGGAAACTAT GCCTCTGCTT TGTACATTGC ATCTGTCAAA GCTAATGCAA
TCGAAAAGGT CGAGTCTGAG CTTCTGCAAT TTGTTGAGGC AGTACGGAAT AGTTCCAAAT TTTCACAGTT TATAAAGGAT
TTGTCTGTGG CTAAGGATGT TAGAGTAAAA GTCATCCAGG AGGTTTGTGG AGAAGCTAAG TTTTCGGACG TGACAAAGAA
CTTCCTTGTT ATTGCTGCTG AGAATGGAAG GCTTAAAAAC ATAGACACCA TTGCAAAGAA GTTTAGGGCG TTGGCAATGG
CATACAAGGG AGAAGTGAAA GCGACTGTAA CCACCGTTGT TGCTCTTCCC CCTGAAGAGG AAAAGGCTTT GAAGGACACT
CTTCAAGAAA TAATGGGTTC TGGAGCAAAG GTTCATCTTG AACAGAAGAT TGATCCTAGC ATACTTGGTG GTATTGTGCT
GGAATTTAAC CAGAAGGTCT TTGACATGTC TATTAAGACC AGGGCACAAC AGATGGAGAG GATCCTCCGA GAGCCCGTAT
CCATTGCCAA CATCTAAATG ACAACATTCT GTGTGTTGTC ATGGTTTAAC TTACATTCTT GTTCATTATA AATTGTGTGG
ATACAGATTT TTATGCGATG GAATGTCATC ATTTTGCAAA TAAAAGCTAC CTCTTTCCAA CTTCTTGTTA TACCTTGTCG
CAATCTCAGT GTAACAGAAT ATATTTTGAT TTGGAATTTT TAAGAGGTTT TTATTAGTTG GTGTTGCCTG GCAATCTGAA
ATTGTTGCGT CCTAATACAA AGTAAAGGAA GTCAAGTCTG TATGCATTGG ATGGGTACTA TTAGTGAGTA TGAAATTAAC
ATCTACTTTT TGCTATTATA AGATTTCACG ATTTTAGTTT TGCATAAA

>Vigan.07G227800.01
ATGGCACTCT GCAATCGCGT CAGATCGGGA ATCTCCCTCT TCAACAAATC CACCTCCCTC ACTTCCCACC GTTCCAATCT
CCAACGATCT CTCGTTGCCC CTTCCATTTC CCTCGCCTCC AGAAATTATG CTAACGTGCC CGGAGAAAAG GACCAAAAAG
TTAAGGTTCC TTTGGCCTTG TATGGAGGTT CAGGAAACTA TGCCTCTGCT TTGTACATTG CATCTGTCAA AGCTAATGCA
ATCGAAAAGG TCGAGTCTGA GCTTCTGCAA TTTGTTGAGG CAGTACGGAA TAGTTCCAAA TTTTCACAGT TTATAAAGGA
TTTGTCTGTG GCTAAGGATG TTAGAGTAAA AGTCATCCAG GAGGTTTGTG GAGAAGCTAA GTTTTCGGAC GTGACAAAGA
ACTTCCTTGT TATTGCTGCT GAGAATGGAA GGCTTAAAAA CATAGACACC ATTGCAAAGA AGTTTAGGGC GTTGGCAATG
GCATACAAGG GAGAAGTGAA AGCGACTGTA ACCACCGTTG TTGCTCTTCC CCCTGAAGAG GAAAAGGCTT TGAAGGACAC
TCTTCAAGAA ATAATGGGTT CTGGAGCAAA GGTTCATCTT GAACAGAAGA TTGATCCTAG CATACTTGGT GGTATTGTGC
TGGAATTTAA CCAGAAGGTC TTTGACATGT CTATTAAGAC CAGGGCACAA CAGATGGAGA GGATCCTCCG AGAGCCCGTA
TCCATTGCCA ACATCTAA

>Vigan.07G227800.01
MALCNRVRSG ISLFNKSTSL TSHRSNLQRS LVAPSISLAS RNYANVPGEK DQKVKVPLAL YGGSGNYASA LYIASVKANA
IEKVESELLQ FVEAVRNSSK FSQFIKDLSV AKDVRVKVIQ EVCGEAKFSD VTKNFLVIAA ENGRLKNIDT IAKKFRALAM
AYKGEVKATV TTVVALPPEE EKALKDTLQE IMGSGAKVHL EQKIDPSILG GIVLEFNQKV FDMSIKTRAQ QMERILREPV
SIANI*