VIGGS:GBrowse

Vigan.07G232100.01

Basic Information:

Name:	Vigan.07G232100.01 Multiple alignment Variant Information
Position:	Chr07:31502867..31508594 (- strand)
Length:	5728

Functional Information:

Description:	Similar to Uncharacterized protein. [I1JW39, Glycine max]
GO:	Biological Process: glycerol ether metabolic process (GO:0006662)
	Biological Process: cell redox homeostasis (GO:0045454)
	Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
InterPro:	Thioredoxin (IPR005746)
	Thioredoxin-like fold (IPR012336)
	Thioredoxin domain (IPR013766)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:58.65,11.21,7.51,18.43,5.95,17.40,6.09,4.56
Arabidopsis thaliana homolog:	AT3G06730.1

Automatic updates:

Name:	NM_001249440 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500580 (LOC100500580), mRNA; nuclear gene for chloroplast product.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:31502867..31503433 (- strand)
Length:	567
Type:	three_prime_UTR

Position:	Chr07:31503434..31503550 (- strand)
Length:	117
Type:	CDS

Position:	Chr07:31504319..31504399 (- strand)
Length:	81
Type:	CDS

Position:	Chr07:31507463..31507585 (- strand)
Length:	123
Type:	CDS

Position:	Chr07:31508207..31508443 (- strand)
Length:	237
Type:	CDS

Position:	Chr07:31508444..31508594 (- strand)
Length:	151
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G232100.01
ATTATCACTA TTTAGTGACA GAAAAGAACC TAAGTTAAAG AGAAATTTTG TCTATCTATC TATTCATGAA AGAATAAGTA
GATATGGTAA ACCCCTGTAC TCAAAAACCC TCTTTTCATT GAAGCACTCT GCAAATTCCA AACCAACAAG AATGGTTCTC
TTCCAATGCC ATGCCCCTCA CCACAGCATG GCCATTCTCT CACCCTTCAA TTCCAAACCC CTTTGTGCTT CTCTACCAAA
CCCTTCTTTC ACAGCTCACC ACCACCCTTA TCCTCTCACC ACAACCACTC ACCTAAATAA CAATAAGCCT CTTTCACTCT
CCACAGTACC CAGAAAGTTG CTCTGCAAGC CACCCCAAGG AAAATATATC AGGGATGACT ATCTTGTGAA AAAGTTGTCA
GCTGAGGAAA TCCAGGAGCT GGTGAAGGGG GAAAGAAAAG TTCCTCTTAT TATAGATTTC TATGCAACTT GGTGTGGACC
TTGCATCTTA ATGGCTCAAG AACTTGAAAT GCTTGCAGTT GAGTACGAAA ACAAGGCAGT CTTTGTTAAG GTTGATACTG
ATGACGAGTA TGAATTTTCA CGCGACATGC AGGTACGTGG GTTGCCAACT GTGTTCTTTA TCAGCCCTGA TCCAAACAAA
GATGCTATAC GAACTGAGGG ACTTATACCA ATACAGATGA TGAGGGACAT CATTGACAAG GATATGTGAA ACAGGAAAGA
GTTATGGTCA GCTGACACAG TTTCTGTTCC TGGATCCTGC AATATGCTGT CTGGTGCAAT GGCATCATAT CTTGGACAGA
ATTGAAGTGC TAACCGATTC ATATGATTTT GGCTCTTGAA GGGTTATAAA ATTGCATGAT ATTTATGTGT AAGCTTTGAC
CACGACAATG CTCTGTAGTG TGCCACATGT GATGTCAAAT GGAAGGACAT TGCATCATGT AACACAATCA TGGACTTGCA
GCACCCCATT CATCAAAATA TATAATATGG TATTTAAAGG GACAATCTGT GTGTGTTAGG TGGTGACTGA GTTGAGCTTA
CATGCTTCAA ATTTATTATC TTGTCACCTT GATGATGTGT TTCTGGGGTG CATTTGAATG TGACAAGCAT GGTTCTCATA
TTCTAGGAAG AAGGGAAATT CAAAGGGTGT CTTTGGAAGA ATTTACTTTA TTTTTATGTT TTTTAGTTTG GCAGCACAAA
GTGGTTTGAA AATTATTGTA GTTTCTTTCA AATTAGCAAT TTTTAACTTA AATCCTAATA AAAAAAGAAA AAGGGG

[show][hide][copy]CDS

>Vigan.07G232100.01
ATGGTTCTCT TCCAATGCCA TGCCCCTCAC CACAGCATGG CCATTCTCTC ACCCTTCAAT TCCAAACCCC TTTGTGCTTC
TCTACCAAAC CCTTCTTTCA CAGCTCACCA CCACCCTTAT CCTCTCACCA CAACCACTCA CCTAAATAAC AATAAGCCTC
TTTCACTCTC CACAGTACCC AGAAAGTTGC TCTGCAAGCC ACCCCAAGGA AAATATATCA GGGATGACTA TCTTGTGAAA
AAGTTGTCAG CTGAGGAAAT CCAGGAGCTG GTGAAGGGGG AAAGAAAAGT TCCTCTTATT ATAGATTTCT ATGCAACTTG
GTGTGGACCT TGCATCTTAA TGGCTCAAGA ACTTGAAATG CTTGCAGTTG AGTACGAAAA CAAGGCAGTC TTTGTTAAGG
TTGATACTGA TGACGAGTAT GAATTTTCAC GCGACATGCA GGTACGTGGG TTGCCAACTG TGTTCTTTAT CAGCCCTGAT
CCAAACAAAG ATGCTATACG AACTGAGGGA CTTATACCAA TACAGATGAT GAGGGACATC ATTGACAAGG ATATGTGA

[show][hide][copy]PROTEIN

>Vigan.07G232100.01
MVLFQCHAPH HSMAILSPFN SKPLCASLPN PSFTAHHHPY PLTTTTHLNN NKPLSLSTVP RKLLCKPPQG KYIRDDYLVK
KLSAEEIQEL VKGERKVPLI IDFYATWCGP CILMAQELEM LAVEYENKAV FVKVDTDDEY EFSRDMQVRG LPTVFFISPD
PNKDAIRTEG LIPIQMMRDI IDKDM*