VIGGS:GBrowse

Vigan.07G235300.01

Basic Information:

Name:	Vigan.07G235300.01 Multiple alignment Variant Information
Position:	Chr07:31798689..31801885 (- strand)
Length:	3197

Functional Information:

Description:	Similar to uridine 5'-monophosphate synthase-like. [XP_004514472.1, Cicer arietinum]
GO:	Biological Process: 'de novo' pyrimidine nucleobase biosynthetic process (GO:0006207)
	Biological Process: pyrimidine nucleotide biosynthetic process (GO:0006221)
	Biological Process: metabolic process (GO:0008152)
	Biological Process: nucleoside metabolic process (GO:0009116)
	Biological Process: 'de novo' UMP biosynthetic process (GO:0044205)
	Molecular Function: catalytic activity (GO:0003824)
	Molecular Function: orotate phosphoribosyltransferase activity (GO:0004588)
	Molecular Function: orotidine-5'-phosphate decarboxylase activity (GO:0004590)
InterPro:	Phosphoribosyltransferase domain (IPR000836)
	Orotidine 5'-phosphate decarboxylase domain (IPR001754)
	Orotate phosphoribosyl transferase domain (IPR004467)
	Ribulose-phosphate binding barrel (IPR011060)
	Aldolase-type TIM barrel (IPR013785)
	Orotidine 5'-phosphate decarboxylase (IPR014732)
	Orotidine 5'-phosphate decarboxylase, active site (IPR018089)
	Orotate phosphoribosyltransferase (IPR023031)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:7.97,10.10,28.27,25.11,40.47,36.08,84.80,30.40
Arabidopsis thaliana homolog:	AT3G54470.1

Automatic updates:

Name:	NM_001289269 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uridine 5'-monophosphate synthase-like (LOC100807008), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr07:31798689..31799026 (- strand)
Length:	338
Type:	three_prime_UTR

Position:	Chr07:31799027..31799155 (- strand)
Length:	129
Type:	CDS

Position:	Chr07:31799459..31799713 (- strand)
Length:	255
Type:	CDS

Position:	Chr07:31799799..31799886 (- strand)
Length:	88
Type:	CDS

Position:	Chr07:31799981..31800063 (- strand)
Length:	83
Type:	CDS

Position:	Chr07:31800286..31800369 (- strand)
Length:	84
Type:	CDS

Position:	Chr07:31800566..31801363 (- strand)
Length:	798
Type:	CDS

Position:	Chr07:31801364..31801885 (- strand)
Length:	522
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.07G235300.01
AAGGTAGATT GCATTTTTTT TTGTTTTCTA AGATCTAATA AGTTTTGGCC AAAACCATGT TTTTGGAAGG CATTCCACAA
AGATGCTTAG AAGTCTTATA ATTATTTTGG TCGGATTATG GTTTGGCTCC TTTTTTAAGA ATTTGGGTTG AGTTTGTCGG
ATTGATCTAT GTCTGTGTGA CCTGCTATGC TACTGAACCC AGTTTTCTTT TTCTTCTAGT CATTGCGCAT TCTTAATTAT
TTTGATTGTG ATTAAGTTGT ACGAATTGGT CAATCTATGA TTTCATTCTA TGATTTGATC TACGAGGTAA GGTGAGAATG
TTGTAACTAT GACTGAGTCT ATGTTTTGGA TTCCATTATG TTGCTTATAA TTGTAGAACA AAAATATCTA TGCAGTTTTT
ACTTCTGCAC ACCAATTGTT CGAGCTTTTT GATTTAGCAG TTTTATTATG CATACTGGGT GAGACAGGTT ATCTCTAAGA
TCATAAATCC TTTCTGAGAC ACACTGAAAA AAAAGGAAGG AAATGTCAGC ATCATCATTG GTAGAGTCTC TAGTTCTTCA
ACTCCATGAG ATTTCAGCTG TCAAATTTGG CAACTTCAAG CTCAAATCTG GCATCTTCTC ACCAATCTAC ATAGACCTAC
GCCTCATCAT ATCTTACCCT TCTCTCCTCC AGCAAATCTC TCAAACCCTT ATTTCCTCTG TCTCTTCCAC TTCCTATGAT
CTTGTATGTG GTGTCCCTTA CACTGCCTTA CCAATTGCTA CATGTGTCTC CCTTACCCAA AACATTCCCA TGGTCATGCG
CCGCAAGGAA ATCAAAGATT ATGGCACTGC TAAAGCTATT GAAGGTGATT TCAGGGCTGG ACAAAGTTGC TTGATCATTG
AGGATTTGGT TACAAGCGGC ACATCGGTTT TGGAAACAGC GGCACCACTA CGTGCTTCTG GGTTGGAGAT CAGTGATGCT
GTTGTCTTGA TTGATAGAGA GCAAGGAGGG AGAGAAAATT TGGAGGAGAA TGGCATCAAG CTGCATGCAA TTATTAAATT
GACGGATATG GTGAAAATTT TGGGCAATCA TGGGAAACTT GATGAGGAGA TGGTAGGGGT TGTTACAAAG TTTTTAGAGG
AGAATCGGAA GGTTGCGGCT GTGCCAAAGG TGGAGAAGCC TGCAACAAAG GTCAAGGCTT TGCCATTTGA GGAGAGGGCT
AGGCTCTCAA AGAATCTAAT GGGAAAGAGG TTGTTTGAGA TCATGGCTGC GAAGACGAGT AATTTGTGTC TAGCTGCCGA
TGTTGGAACT GCAGCTGAAT TGATTGAAAT CGCTGAGAAG GTTGGACCTG AGATTTGCCT GCTGAAGACT CATGTGGACA
TTTATCCAGA TTTTACTCCT GAATTTGGCT CAAAGCTTCT CTCGATTGCA GAAAAACATA ACTTCTTGAT CTTTGAGGAT
CGTAAATTTG CTGATATTGG TAACACAGTG ACTATGCAGT ATGCAGGAGG TATCTTTCAA ATATTGGATT GGGCTCATAT
AGTGAATGCT CACATAATCT CAGGTCCTGG AATTGTTGAT GGATTAAAAT TGAAGGGTTT ACCTCGAGGT AGGGGTCTGT
TATTGCTTGC TGAAATGAGT TCAGCAGGTA ACTTTGCCAA GGGAGATTAT ACCGCAGCTG CAGTAAAAAT TGCTGAGGAT
CATTCTGATT TTGTAATTGG CTTCATCTCA GTCAATCCTG CATCATGGCC AAGAGCACCT ATAAATCCCT CTTTCATTCA
GGCAACCCCT GGAGTTCAAA TGGTAACCGG TGGAGATGCT TTAGGCCAGC AATACAACAC TCCATACTCT GTGGTTCATG
ATAGGGGCAG TGACATAATC ATTGTGGGAC GAGGCATAAT CAAAGCAGCA AATCCTGCTG AGGCAGCTCG TGAATACCGA
CTTGAAGGGT GGAAAGCATA TTTGGCCAAG TGTTCTTGAT GCCTGAATCC TGCAGAATAA GAAAAGGATG AGTCAATAAT
GAGACATCTA ATCTCACCCA GAGGAAGATT GTTTTGGGTA CAATATAACA TTGATGACAT TTTTCAACTG CAATATTTGA
GGGGATCATT TTTTGTTAGT TTTATTTTTC ACTTCAAGTT TGCCTTGCCA AGCTAGTCTC CTATTAAGCT TGTTTCTTTC
CGAACTTGCT CATATTGTTT CTTGCTAAGC TTGTTGAAGT TGTCTCTTGT TAAGCATGCC GAGGTTGTCT CCTACCGAGC
TTCATAACAT TGTATCGTTA GTTAAGATCT TTTTAATATA TGTGGATGAT TCCAGAA

[show][hide][copy]CDS

>Vigan.07G235300.01
ATGTCAGCAT CATCATTGGT AGAGTCTCTA GTTCTTCAAC TCCATGAGAT TTCAGCTGTC AAATTTGGCA ACTTCAAGCT
CAAATCTGGC ATCTTCTCAC CAATCTACAT AGACCTACGC CTCATCATAT CTTACCCTTC TCTCCTCCAG CAAATCTCTC
AAACCCTTAT TTCCTCTGTC TCTTCCACTT CCTATGATCT TGTATGTGGT GTCCCTTACA CTGCCTTACC AATTGCTACA
TGTGTCTCCC TTACCCAAAA CATTCCCATG GTCATGCGCC GCAAGGAAAT CAAAGATTAT GGCACTGCTA AAGCTATTGA
AGGTGATTTC AGGGCTGGAC AAAGTTGCTT GATCATTGAG GATTTGGTTA CAAGCGGCAC ATCGGTTTTG GAAACAGCGG
CACCACTACG TGCTTCTGGG TTGGAGATCA GTGATGCTGT TGTCTTGATT GATAGAGAGC AAGGAGGGAG AGAAAATTTG
GAGGAGAATG GCATCAAGCT GCATGCAATT ATTAAATTGA CGGATATGGT GAAAATTTTG GGCAATCATG GGAAACTTGA
TGAGGAGATG GTAGGGGTTG TTACAAAGTT TTTAGAGGAG AATCGGAAGG TTGCGGCTGT GCCAAAGGTG GAGAAGCCTG
CAACAAAGGT CAAGGCTTTG CCATTTGAGG AGAGGGCTAG GCTCTCAAAG AATCTAATGG GAAAGAGGTT GTTTGAGATC
ATGGCTGCGA AGACGAGTAA TTTGTGTCTA GCTGCCGATG TTGGAACTGC AGCTGAATTG ATTGAAATCG CTGAGAAGGT
TGGACCTGAG ATTTGCCTGC TGAAGACTCA TGTGGACATT TATCCAGATT TTACTCCTGA ATTTGGCTCA AAGCTTCTCT
CGATTGCAGA AAAACATAAC TTCTTGATCT TTGAGGATCG TAAATTTGCT GATATTGGTA ACACAGTGAC TATGCAGTAT
GCAGGAGGTA TCTTTCAAAT ATTGGATTGG GCTCATATAG TGAATGCTCA CATAATCTCA GGTCCTGGAA TTGTTGATGG
ATTAAAATTG AAGGGTTTAC CTCGAGGTAG GGGTCTGTTA TTGCTTGCTG AAATGAGTTC AGCAGGTAAC TTTGCCAAGG
GAGATTATAC CGCAGCTGCA GTAAAAATTG CTGAGGATCA TTCTGATTTT GTAATTGGCT TCATCTCAGT CAATCCTGCA
TCATGGCCAA GAGCACCTAT AAATCCCTCT TTCATTCAGG CAACCCCTGG AGTTCAAATG GTAACCGGTG GAGATGCTTT
AGGCCAGCAA TACAACACTC CATACTCTGT GGTTCATGAT AGGGGCAGTG ACATAATCAT TGTGGGACGA GGCATAATCA
AAGCAGCAAA TCCTGCTGAG GCAGCTCGTG AATACCGACT TGAAGGGTGG AAAGCATATT TGGCCAAGTG TTCTTGA

[show][hide][copy]PROTEIN

>Vigan.07G235300.01
MSASSLVESL VLQLHEISAV KFGNFKLKSG IFSPIYIDLR LIISYPSLLQ QISQTLISSV SSTSYDLVCG VPYTALPIAT
CVSLTQNIPM VMRRKEIKDY GTAKAIEGDF RAGQSCLIIE DLVTSGTSVL ETAAPLRASG LEISDAVVLI DREQGGRENL
EENGIKLHAI IKLTDMVKIL GNHGKLDEEM VGVVTKFLEE NRKVAAVPKV EKPATKVKAL PFEERARLSK NLMGKRLFEI
MAAKTSNLCL AADVGTAAEL IEIAEKVGPE ICLLKTHVDI YPDFTPEFGS KLLSIAEKHN FLIFEDRKFA DIGNTVTMQY
AGGIFQILDW AHIVNAHIIS GPGIVDGLKL KGLPRGRGLL LLAEMSSAGN FAKGDYTAAA VKIAEDHSDF VIGFISVNPA
SWPRAPINPS FIQATPGVQM VTGGDALGQQ YNTPYSVVHD RGSDIIIVGR GIIKAANPAE AAREYRLEGW KAYLAKCS*