GBrowse Details

Vigan.08G002400.01

Basic Information:
Name: Vigan.08G002400.01
Multiple alignment
Variant Information
Position: Chr08:157631..164324 (+ strand)
Length: 6694
Functional Information:
Description: Similar to Uncharacterized protein. [I1NJD8, Glycine max]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
Molecular Function: L-ascorbic acid binding (GO:0031418)
InterPro: Oxoglutarate/iron-dependent dioxygenase (IPR005123)
Prolyl 4-hydroxylase, alpha subunit (IPR006620)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.99,6.95,9.99,8.33,16.05,10.57,14.45,6.98
Arabidopsis thaliana homolog: AT2G43080.1
Structure :
Position: Chr08:157631..157675 (+ strand)
Length: 45
Type: five_prime_UTR
Position: Chr08:157676..157805 (+ strand)
Length: 130
Type: CDS
Position: Chr08:158103..158150 (+ strand)
Length: 48
Type: CDS
Position: Chr08:158293..158361 (+ strand)
Length: 69
Type: CDS
Position: Chr08:158817..158869 (+ strand)
Length: 53
Type: CDS
Position: Chr08:159303..159368 (+ strand)
Length: 66
Type: CDS
Position: Chr08:159526..159600 (+ strand)
Length: 75
Type: CDS
Position: Chr08:160272..160346 (+ strand)
Length: 75
Type: CDS
Position: Chr08:160885..160955 (+ strand)
Length: 71
Type: CDS
Position: Chr08:161038..161089 (+ strand)
Length: 52
Type: CDS
Position: Chr08:161207..161296 (+ strand)
Length: 90
Type: CDS
Position: Chr08:161508..161600 (+ strand)
Length: 93
Type: CDS
Position: Chr08:163794..163901 (+ strand)
Length: 108
Type: CDS
Position: Chr08:163902..164324 (+ strand)
Length: 423
Type: three_prime_UTR


>Vigan.08G002400.01
CCCGAAGAAG TGGTGGATTG GCAGAGGCAA AGGAGCATAA AAGCAATGGG CGTTAAAAGC GGTTTGTCAT TTTTGTTCTT
TGAGACCAAA AGACATTTCA TTTTCAACTC CATGGCTCCC TCCATGAGAA TTGTCTTCGG TCTTCTCACT TTCGTCACCG
TCGGAATGAT TATAGGTGCT CTCTCTCAGT TGGCTTTCAT TCGAAAATTG GAAGACTCAT ACGGCTCTGA TTCTTTGCCA
TTTAGAAGAT TGCGTGGACT CGAAGGTGAC GGTTACCTTC AATTGCCAAG AGGTATTCCT TTTTGGAATA ATGACAAGGA
AGCAGAAATC TTACGCCTTG GATATGTCAA ACCTGAAGTG ATTAGCTGGT CTCCTCGAAT TATTGTACTT CATAACTTCT
TGAGTTTAGA GGAATGTGAT TATCTCAGGG CTTTAGCTCT CCCTCGCTTG CAAATTTCAA CTGTGGTTGA TACGAAAACC
GGAAAGGGAA TCAAGAGTAA CGTCAGGACC AGCTCTGGTA TGTTTTTGAA TCCTCAAGAA AGAAAATATG CTATGGTACA
AGCAATTGAA AAAAGAATCT CTGTCTATTC TCAAATACCA ATTGAGAACG GTGAGCTTAT GCAAGTCTTG AGGTACGAGA
AGAATCAATA TTACAAACCT CATCATGACT ATTTTTCTGA CACTTTCAAC TTGAAGCGTG GTGGGCAGCG AATAGCCACA
ATGCTTATGT ATTTGAGTGA CAATGTTGAA GGAGGAGAAA CATATTTCCC ATTGGCTGGT TCAGGTGAAT GTAACTGTGG
TGGGAAACTT GTCCAAGGGC TATCTGTCAA GCCAACTAAA GGAAATGCTG TGCTTTTCTG GAGTATGGGA TTGGATGGTC
AATCAGATCC CAAAAGTGTG CATGGAGGAT GTGAGGTAAT CTCTGGGGAG AAGTGGTCAG CTACGAAGTG GATGAGGCAG
ACCACTCACT CTTGATTTCT TATCCACCGT CTCCTGCAAA CAAAAATTCA CTAATTTGGA TCTTGTCCTT ATAAAAAATA
ATGATTAAGA TTAGTTATTG ATATTAGAAA TATTCATTAG TGTTAACTTA AATTAATAAA CTGCGGCGTA ATCTCATATT
AGATGTTCCA GGTATTATGT TTCTGTTTAA CATTTTGTCA GGTCGGGATG TTGATTCGAA GAGACTGACC TAAAGATTTC
TCATTGAAAT ATTCGTAAAT GGACTAAATC TTTTTTATCC ACCCTCATAA TCCCTTGACC CCTTCTACAC CATACCATAT
AATTAGGCTG TTAGCCAATA TCACAACCAA AGGCTACGAT AAAGGCACCT GAACCACTAC CTTTGAACAG TGTATTATTT
CCCATAGTAA AGAAGTTGTG TTTCACAAAT GTTTTTTT

>Vigan.08G002400.01
ATGGGCGTTA AAAGCGGTTT GTCATTTTTG TTCTTTGAGA CCAAAAGACA TTTCATTTTC AACTCCATGG CTCCCTCCAT
GAGAATTGTC TTCGGTCTTC TCACTTTCGT CACCGTCGGA ATGATTATAG GTGCTCTCTC TCAGTTGGCT TTCATTCGAA
AATTGGAAGA CTCATACGGC TCTGATTCTT TGCCATTTAG AAGATTGCGT GGACTCGAAG GTGACGGTTA CCTTCAATTG
CCAAGAGGTA TTCCTTTTTG GAATAATGAC AAGGAAGCAG AAATCTTACG CCTTGGATAT GTCAAACCTG AAGTGATTAG
CTGGTCTCCT CGAATTATTG TACTTCATAA CTTCTTGAGT TTAGAGGAAT GTGATTATCT CAGGGCTTTA GCTCTCCCTC
GCTTGCAAAT TTCAACTGTG GTTGATACGA AAACCGGAAA GGGAATCAAG AGTAACGTCA GGACCAGCTC TGGTATGTTT
TTGAATCCTC AAGAAAGAAA ATATGCTATG GTACAAGCAA TTGAAAAAAG AATCTCTGTC TATTCTCAAA TACCAATTGA
GAACGGTGAG CTTATGCAAG TCTTGAGGTA CGAGAAGAAT CAATATTACA AACCTCATCA TGACTATTTT TCTGACACTT
TCAACTTGAA GCGTGGTGGG CAGCGAATAG CCACAATGCT TATGTATTTG AGTGACAATG TTGAAGGAGG AGAAACATAT
TTCCCATTGG CTGGTTCAGG TGAATGTAAC TGTGGTGGGA AACTTGTCCA AGGGCTATCT GTCAAGCCAA CTAAAGGAAA
TGCTGTGCTT TTCTGGAGTA TGGGATTGGA TGGTCAATCA GATCCCAAAA GTGTGCATGG AGGATGTGAG GTAATCTCTG
GGGAGAAGTG GTCAGCTACG AAGTGGATGA GGCAGACCAC TCACTCTTGA 

>Vigan.08G002400.01
MGVKSGLSFL FFETKRHFIF NSMAPSMRIV FGLLTFVTVG MIIGALSQLA FIRKLEDSYG SDSLPFRRLR GLEGDGYLQL
PRGIPFWNND KEAEILRLGY VKPEVISWSP RIIVLHNFLS LEECDYLRAL ALPRLQISTV VDTKTGKGIK SNVRTSSGMF
LNPQERKYAM VQAIEKRISV YSQIPIENGE LMQVLRYEKN QYYKPHHDYF SDTFNLKRGG QRIATMLMYL SDNVEGGETY
FPLAGSGECN CGGKLVQGLS VKPTKGNAVL FWSMGLDGQS DPKSVHGGCE VISGEKWSAT KWMRQTTHS*