GBrowse Details

Vigan.08G004700.01

Basic Information:
Name: Vigan.08G004700.01
Multiple alignment
Variant Information
Position: Chr08:276351..282812 (+ strand)
Length: 6462
Functional Information:
Description: Similar to BZIP transcription factor bZIP99. [Q0GPG6, Glycine max]
GO: Biological Process: transcription, DNA-dependent (GO:0006351)
Biological Process: regulation of transcription, DNA-dependent (GO:0006355)
Molecular Function: sequence-specific DNA binding transcription factor activity (GO:0003700)
Molecular Function: sequence-specific DNA binding (GO:0043565)
InterPro: Basic-leucine zipper domain (IPR004827)
Transcription factor TGA like domain (IPR025422)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:12.15,11.58,9.91,11.04,15.23,9.43,21.59,14.66
Arabidopsis thaliana homolog: AT3G12250.4
Automatic updates:
Name: NM_001255950 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max transcription factor HBP-1b(c1)-like (LOC100816123), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:276351..277186 (+ strand)
Length: 836
Type: five_prime_UTR
Position: Chr08:277187..277227 (+ strand)
Length: 41
Type: CDS
Position: Chr08:277573..277667 (+ strand)
Length: 95
Type: CDS
Position: Chr08:278808..278884 (+ strand)
Length: 77
Type: CDS
Position: Chr08:278998..279186 (+ strand)
Length: 189
Type: CDS
Position: Chr08:279344..279418 (+ strand)
Length: 75
Type: CDS
Position: Chr08:279711..279770 (+ strand)
Length: 60
Type: CDS
Position: Chr08:280626..280703 (+ strand)
Length: 78
Type: CDS
Position: Chr08:280817..280868 (+ strand)
Length: 52
Type: CDS
Position: Chr08:281020..281291 (+ strand)
Length: 272
Type: CDS
Position: Chr08:282021..282269 (+ strand)
Length: 249
Type: CDS
Position: Chr08:282449..282595 (+ strand)
Length: 147
Type: CDS
Position: Chr08:282596..282812 (+ strand)
Length: 217
Type: three_prime_UTR


>Vigan.08G004700.01
CCTTCATCTC TTTCTCTCTC TCTCTCTCTC TCTCTCATAT GATATAGCCC TCTTCCTTTC ACTTTAATCC AACAATAATA
ATTATTCACC AAAAAAAAGT TGAACAGATA CCATCATCAT TCATCATCAT CACCCACATC ATCAGAATTC CAAGGTGGGT
TCCCTTCATT TTCTGCCAGT ATTTGGTAGC ATCAGTGAAA GCTCAAAACT TTATTTTTAT TTTTTTGCAA TTAATCTTCT
TGAGATTAGA TTTGGTATTT TCTTTTTTTA TTGGTTTGGG CGTCCATCAG GGGGTTGCTA GGTTGGTGTC AAATTAGTCT
TTTGCTTGTC AAAAGTGTCC TGCTTTGACT TTTTGCACTG TTTATCTGGT TGCAAATTAT CGTTTTCCGT GAGTTTAGCT
TGTGGGCACA CTGGATTGTT CCCAAGTCTG TGCTTCAGGC AGCGAAGTTG GTTTTTTAAT CGCTCGAGCT ACTACAGTTG
AGTGTTTTTT TTCTTCAACG GTTTCAGATT TGTTTTCTGT TACTATCCGA GGAAGTCCAG GAATTCTCTA GATTTGAGTT
GTTTTAATTT TGTCAAAGAT GAGTCTGCCG GTCATCCCTC ATGGGCAGAA GCATGTGAAG AGTTTCTTTT GCTATCAATG
TTTTTGATTT AGAGTCGTTT TGCTAGTGTG CTACCAGTGA AGCAAAGACT ATGTTTTTTA TTCTGTGAAG TATTTTGGTC
ATGGTGAGTT TCAGGTCTTG AATTTTGTTC GGCTGCAAGG TTATTATTGA AATATGATGG TGTGTGTGGA GTAGAGCTGT
GTTTGTGTAG AAGATGAGAA GGGAACAGCA AGAGGGATGC CGAGCTTCAA TCCACAACTG CCCAATTCCA ATGCATGCTA
TACAGAGGGA AGCACAGTTG ATTCTTTTCG TCTGTCTGAC TTTGATCAAT CAGTTGGATA TCGCATAGAG GATGCTGTTG
CCTTGAGTGG AAACTCAATT TTAGACTCAC TTAAAGTAAG TAGCCAGACA ATTTCTCGAG GTGTTATTCA ACTTGGTTCC
TTTGATAAGT TGCCAACTTC ACTTGACAAA AGCATATTAA CAAACCAAAC AGAGCAGCAA AGCTTGCAAT TCCAAAAGGT
TCACACATCA AATTTGGTTA CTGGTGATAC AGAACACCAG GAAGAGTTTG CCATGGCTGA TGCCAGTCCT AGAACTGATA
TTTCTACAGA TGCTGACACC GACGATAAGA ATCCACAGTT TGATAGAAAT CAAGCCCTTG CTGCTGTGGC TTCTGACTCC
AGTGACAGAT CAAAGGATAA AACAGATCAG AAGACTCTCC GCAGGCTTGC TCAGAATCGT GAGGCTGCAA GAAAAAGCCG
ACTGAGAAAG AAAGCTTATG TTCAACAGCT GGAAAGTAGT CGTTTAAAGC TGACCCAACT GGAGCAAGAG CTTCAGCGAG
CTAGGCAGCA GGGAGTCTTT ATATCAAGTT CAGGTGATCA AGCGCATTCG ATGAGTGGAA ATGGGGCCAT GGCATTTGAT
GCAGAATATG CAAGGTGGCT GGAAGAGCAG AATCGACAAA TTAATGAGCT AAGATCAGCT GTAAATTCTC ACGCAGGTGA
TACAGAACTC TGCATGATTA TCGATGGTGT AATGGCACAT TATGATGAAA TATTTAGACT GAAGGCCAAT GCAGCTAAGG
CTGATGTCTT CCATTTGTTG TCTGGCATGT GGAAAACACC AGCCGAGAGG TGTTTCCTAT GGCTTGGAGG TTTTCGGTCT
TCTGAACTCC TCAAGCTGCT GGTAAATCAG TTGGAACCTC TGACAGAGCA GCAGTTAGTG GGTATCACAA ACTTGCAGCA
ATCTTCCCAA CAGGCTGAAG ATGCATTGTC TCAGGGCATG GAAGCATTGC AGCAGTCCCT TTCGGAGACA TTATCCACTG
GATCACTTGG CTCCTCTGGT TCATCAGGGA ATGTGGCAAA TTACATGGGT CAAATGGCTA TGGCCATGGG CAAATTAGGG
ACACTTGAGG GGTTCATTAA GCAGGCTGAT AATCTGCGCC AGCAAACACT GCAACAAATC CATCGGATAC TGACAACTCG
GCAATCTGCT CGTGCACTGC TTGCAATACA TGACTACTTT TCTAGGCTGC GTGCTCTTAG CTCTCTTTGG CTTGCTCGCC
CAAGAGACTG ATGCATGGTA AATAGCGTGT CATTAATTTT CATGGCTCTG ACACTGCTTA CAATTTTACT GTGTTGTAGT
TTTCATATTA CTGATGTTAG TTTTTCGTAA GTTATAATCT AGAAACTGAA TTGGTGACCA GGGTATGTAT TTTGTTTATT
ACTACTAATG TAACAATATT CTCCATTGTA ACTTGGTTTA AGAGATTACA TTATTTTATA CAAAATAG

>Vigan.08G004700.01
ATGCCGAGCT TCAATCCACA ACTGCCCAAT TCCAATGCAT GCTATACAGA GGGAAGCACA GTTGATTCTT TTCGTCTGTC
TGACTTTGAT CAATCAGTTG GATATCGCAT AGAGGATGCT GTTGCCTTGA GTGGAAACTC AATTTTAGAC TCACTTAAAG
TAAGTAGCCA GACAATTTCT CGAGGTGTTA TTCAACTTGG TTCCTTTGAT AAGTTGCCAA CTTCACTTGA CAAAAGCATA
TTAACAAACC AAACAGAGCA GCAAAGCTTG CAATTCCAAA AGGTTCACAC ATCAAATTTG GTTACTGGTG ATACAGAACA
CCAGGAAGAG TTTGCCATGG CTGATGCCAG TCCTAGAACT GATATTTCTA CAGATGCTGA CACCGACGAT AAGAATCCAC
AGTTTGATAG AAATCAAGCC CTTGCTGCTG TGGCTTCTGA CTCCAGTGAC AGATCAAAGG ATAAAACAGA TCAGAAGACT
CTCCGCAGGC TTGCTCAGAA TCGTGAGGCT GCAAGAAAAA GCCGACTGAG AAAGAAAGCT TATGTTCAAC AGCTGGAAAG
TAGTCGTTTA AAGCTGACCC AACTGGAGCA AGAGCTTCAG CGAGCTAGGC AGCAGGGAGT CTTTATATCA AGTTCAGGTG
ATCAAGCGCA TTCGATGAGT GGAAATGGGG CCATGGCATT TGATGCAGAA TATGCAAGGT GGCTGGAAGA GCAGAATCGA
CAAATTAATG AGCTAAGATC AGCTGTAAAT TCTCACGCAG GTGATACAGA ACTCTGCATG ATTATCGATG GTGTAATGGC
ACATTATGAT GAAATATTTA GACTGAAGGC CAATGCAGCT AAGGCTGATG TCTTCCATTT GTTGTCTGGC ATGTGGAAAA
CACCAGCCGA GAGGTGTTTC CTATGGCTTG GAGGTTTTCG GTCTTCTGAA CTCCTCAAGC TGCTGGTAAA TCAGTTGGAA
CCTCTGACAG AGCAGCAGTT AGTGGGTATC ACAAACTTGC AGCAATCTTC CCAACAGGCT GAAGATGCAT TGTCTCAGGG
CATGGAAGCA TTGCAGCAGT CCCTTTCGGA GACATTATCC ACTGGATCAC TTGGCTCCTC TGGTTCATCA GGGAATGTGG
CAAATTACAT GGGTCAAATG GCTATGGCCA TGGGCAAATT AGGGACACTT GAGGGGTTCA TTAAGCAGGC TGATAATCTG
CGCCAGCAAA CACTGCAACA AATCCATCGG ATACTGACAA CTCGGCAATC TGCTCGTGCA CTGCTTGCAA TACATGACTA
CTTTTCTAGG CTGCGTGCTC TTAGCTCTCT TTGGCTTGCT CGCCCAAGAG ACTGA

>Vigan.08G004700.01
MPSFNPQLPN SNACYTEGST VDSFRLSDFD QSVGYRIEDA VALSGNSILD SLKVSSQTIS RGVIQLGSFD KLPTSLDKSI
LTNQTEQQSL QFQKVHTSNL VTGDTEHQEE FAMADASPRT DISTDADTDD KNPQFDRNQA LAAVASDSSD RSKDKTDQKT
LRRLAQNREA ARKSRLRKKA YVQQLESSRL KLTQLEQELQ RARQQGVFIS SSGDQAHSMS GNGAMAFDAE YARWLEEQNR
QINELRSAVN SHAGDTELCM IIDGVMAHYD EIFRLKANAA KADVFHLLSG MWKTPAERCF LWLGGFRSSE LLKLLVNQLE
PLTEQQLVGI TNLQQSSQQA EDALSQGMEA LQQSLSETLS TGSLGSSGSS GNVANYMGQM AMAMGKLGTL EGFIKQADNL
RQQTLQQIHR ILTTRQSARA LLAIHDYFSR LRALSSLWLA RPRD*