VIGGS:GBrowse

Vigan.08G012900.01

Basic Information:

Name:	Vigan.08G012900.01 Multiple alignment Variant Information
Position:	Chr08:891849..895074 (- strand)
Length:	3226

Functional Information:

Description:	Similar to Uncharacterized protein. [C6TBW7, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	Small GTPase superfamily, ARF type (IPR024156)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:12.96,26.61,31.08,17.18,31.13,21.80,30.89,19.70

Automatic updates:

Name:	NM_001249871 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100499844 (LOC100499844), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:891849..892590 (- strand)
Length:	742
Type:	three_prime_UTR

Position:	Chr08:892591..892818 (- strand)
Length:	228
Type:	CDS

Position:	Chr08:892890..892952 (- strand)
Length:	63
Type:	CDS

Position:	Chr08:893152..893249 (- strand)
Length:	98
Type:	CDS

Position:	Chr08:893472..893537 (- strand)
Length:	66
Type:	CDS

Position:	Chr08:893985..894085 (- strand)
Length:	101
Type:	CDS

Position:	Chr08:894425..894497 (- strand)
Length:	73
Type:	CDS

Position:	Chr08:894800..894872 (- strand)
Length:	73
Type:	CDS

Position:	Chr08:894873..895074 (- strand)
Length:	202
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G012900.01
GGAGAATAGG GTGTGGGCGG GAGCATGAAA GAAGAAGTGT GGTGGCAAAA CGTAACGGGA TGATATGATA GGCGCAGAGA
GAGAAAACGC AAAGACATTT GGTGTTGGAT CCCTTTCCAT GTCGCCCACC GCTTCCTTCT TCTTCTAACC ATTTCCCTTC
CGATCCCTCT TCCGCGCGTT AGGGCATTTT TCTCACTCAG CCATGGCAGC AGCACCCGCC AGAGCTCGTG CCGATTACGA
TTACCTCATC AAGCTCCTTC TTATTGGCGA CAGCGGTGTG GGGAAGAGTT GTCTCCTTTT GAGATTTTCT GATGGTTCAT
TCACAACCAG TTTTATCACC ACCATTGGCA TCGATTTTAA GATAAGAACC ATTGAACTGG ATGGCAAACG GATTAAGTTA
CAAATCTGGG ATACTGCTGG TCAGGAGCGA TTTAGAACTA TTACCACAGC TTATTACCGA GGAGCCATGG GTATCTTGCT
GGTTTATGAT GTTACTGATG AAGCATCTTT CAATAATATT CGGAATTGGA TTCGCAATAT TGAACAACAT GCTTCTGACA
ATGTAAACAA GATACTTGTT GGCAACAAGG CTGATATGGA TGAAAGTAAA AGGGCTGTAC CTACCTCCAA AGGTCAAGCA
CTTGCTGATG AGTACGGTAT CAAGTTCTTT GAAACTAGTG CAAAAACCAA CATGAATGTG GAAGAGGTTT TCTTTTCAAT
AGCAAGAGAT ATCAAGCAAA GGCTTGCAGA CACAGATTCA AGAGCTGAGG TAATTTATCA ACTCTTTTCT CTATGTCCTT
TGTTTTTCCT TTTCGTCAGA GATATGCAGG TGCTCTTTTT TTTCGAAAAA CTAAATTTTT TCCAGTGTGT ACCAACCAAG
TACATGAAGA AAAATAATCG TTAGGAAGTA TTTGGGATTT TCTTTATGCT AAGTTTCAAA ATTAGTGAAT AGTTGTGTGG
CGTCTTATGA ATTGCTGAGC ATTCATACTC TCTTCTCTGT TGATTCAGCC TCAAACCATC AAGATTAACC AACCTGACCA
GGCAGCCAGT GGTGGCGACC CTGCACAAAA GTCGGCTTGC TGCGGTTCAT GAAAAGAATG GTATCTGCAG CAAGTGGTGC
AGGTTTCTGC AATAGCACTC ATCTGGGTGC TAAGGTTATT CTGATGTCAT TATTAGTGGG AGCATGTATT TGACCCTCCG
TATCTCCCAA CTGCAGATGT CGTGTTTTAA AGTTAATATT TTAAATTCTT TGCTCATTGA GTTGGTGGAA TTTATTGTGA
CTAGTTAATT TGCTTCATTT TTCTCTTTCA TTTGTAGTCT GACTCTTAAA AAGGATATCT TGATTAGATG CGGATAGATT
ATCACAACAG CTTGATCATT TGCAAAATGT CGGTCCAAAT GTTTTTGTTG TTGCTGGCTT AGGAATCTAG AGGCAAACCT
AAGAATGTTT TTACTTGGAA GCAAAATGGA AACCCTTGCA GTTTCCATCC GCAATTTTAA TGCCGTAGTG ACTAAATGGT
ACAGGGGGTG TAGCATTGCT TGTATTGCAT GATGATCTTG CAATATTTTC ACCGCCGCGA AATGTTCTGG TTCGGAAGGT
GGAGCCAAGT TTTTTGGAAA AACTTAAAAT ATTTATGCAT GAAAAA

[show][hide][copy]CDS

>Vigan.08G012900.01
ATGGCAGCAG CACCCGCCAG AGCTCGTGCC GATTACGATT ACCTCATCAA GCTCCTTCTT ATTGGCGACA GCGGTGTGGG
GAAGAGTTGT CTCCTTTTGA GATTTTCTGA TGGTTCATTC ACAACCAGTT TTATCACCAC CATTGGCATC GATTTTAAGA
TAAGAACCAT TGAACTGGAT GGCAAACGGA TTAAGTTACA AATCTGGGAT ACTGCTGGTC AGGAGCGATT TAGAACTATT
ACCACAGCTT ATTACCGAGG AGCCATGGGT ATCTTGCTGG TTTATGATGT TACTGATGAA GCATCTTTCA ATAATATTCG
GAATTGGATT CGCAATATTG AACAACATGC TTCTGACAAT GTAAACAAGA TACTTGTTGG CAACAAGGCT GATATGGATG
AAAGTAAAAG GGCTGTACCT ACCTCCAAAG GTCAAGCACT TGCTGATGAG TACGGTATCA AGTTCTTTGA AACTAGTGCA
AAAACCAACA TGAATGTGGA AGAGGTTTTC TTTTCAATAG CAAGAGATAT CAAGCAAAGG CTTGCAGACA CAGATTCAAG
AGCTGAGGTA ATTTATCAAC TCTTTTCTCT ATGTCCTTTG TTTTTCCTTT TCGTCAGAGA TATGCAGGTG CTCTTTTTTT
TCGAAAAACT AAATTTTTTC CAGTGTGTAC CAACCAAGTA CATGAAGAAA AATAATCGTT AG

[show][hide][copy]PROTEIN

>Vigan.08G012900.01
MAAAPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI
TTAYYRGAMG ILLVYDVTDE ASFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA
KTNMNVEEVF FSIARDIKQR LADTDSRAEV IYQLFSLCPL FFLFVRDMQV LFFFEKLNFF QCVPTKYMKK NNR*