VIGGS:GBrowse

Vigan.08G014800.01

Basic Information:

Name:	Vigan.08G014800.01 Multiple alignment Variant Information
Position:	Chr08:1014134..1015563 (- strand)
Length:	1430

Functional Information:

Description:	Similar to Uncharacterized protein. [I1NF36, Glycine max]
GO:	Molecular Function: protein binding (GO:0005515)
InterPro:	Glutathione S-transferase, N-terminal (IPR004045)
	Glutathione S-transferase, C-terminal (IPR004046)
	Glutathione S-transferase, C-terminal-like (IPR010987)
	Thioredoxin-like fold (IPR012336)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:30.96,0.36,17.40,19.05,4.15,9.49,6.47,1.55

Automatic updates:

Name:	KM818469 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max tau class glutathione S-transferase (GSTU62) mRNA, complete cds.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001304516 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max glutathione S-transferase GST 18 (GSTU62), mRNA.
PubMed ID:	11080288 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:1014134..1014652 (- strand)
Length:	519
Type:	three_prime_UTR

Position:	Chr08:1014653..1015000 (- strand)
Length:	348
Type:	CDS

Position:	Chr08:1015084..1015392 (- strand)
Length:	309
Type:	CDS

Position:	Chr08:1015393..1015563 (- strand)
Length:	171
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G014800.01
TTTGATTTTA ATACGTAACT GAAAAATTCG ATGGAATAAA AGACGAGATA TCCAAAGAGG AAAGATAAGA CGAATTGGAA
TAAGCTCCTT GACTTAGTCC ATGATAAGAT AAGACGAATG TTATTGTTAT TATAAGGTTC CATGTTGCAC TGCAACTGAA
AATAAGCAAC AATGGGAGAG GTTAAAGTGC TTGGGTTTTG GTCTAGCCCT TTCGTTCATA GGGTGATATG GGCTCTGAAG
TTAAAGGGCA TTAGTTATGA GTACATAGAG ATTGACAGAC ACAACAAAGG CGACCTACTT CTGCAATCCA ATCCAGTTTA
CAAGAAAGTC CCAGTGCTTA TTCATGGAGG CAGAGCCATT CCAGAGTCTA TGGTCATCCT TGAATACATC GAAGACACAT
GGCCACATAA CCCATTGCTG CCAAAAGACA ACCATCAGAA AGCCTTAGCT CGCTTTTGGA TTAAATTTGG AGAAGATTCG
ATCGCCTCTA TCACTGATAT GTTTCTCCGA CCTTACAAAG ATGAACAAGA AAGAGCAAGT GCATGGAAAA GAGCACAAGA
AACTATAACA GTAATCGAAG AGCAAGGTCT AGGGGAGAAG AAATTCTTTG GAGGCAACAA CATTGGAATG GTGGACATAG
CATATGGATG CCTAAGCCAT TGGTTGGAAG GCTTGGAGGA AATTGTTGGG TTGAAATTAA TTGAACCCAA CAGATTTCCT
CGGTTGCATG CGTGGACACA AAACTTCAAA CAAGTTCCTG TCATCAAAGA AAACCTTCCG GATTATGGGA AACTGTTGAT
ACATCTTCAA TGGCGCAGGC AGCAATAAGT CACAAAACAG TAGAATAAAC AACTCAAAAG AGGTAATGGA ATTGTGGTTA
TAGTCTGACC GTGTGTTCAA ACTTGAGAAA TTTCAATGAA AAAATGAAAT ATATAATATT TGAACGAAAT AAAATTGAAT
TCTCTTTATT TATGGTAAGA GAGAATATGT TTTCACTATC AAAAAATACA GTTAAATAAT GCGCTTATGT CATGACTTTT
TTATTTAATG TGATTTTGTA ATATTTTTAT TCACTACAGC CAAATCTCAA CATAATTCAA CTAAGAAAAT AAAAATGTAG
ATCAAAAGTT GAATTAAATA CCTTATTATT GACGTTCCAC CTCCCATGTC CTGAATTGAA GTCCTCCTCC TCTCTGATCT
ACAACTGAAC GCAATTCCAA ATGGAACAAA ACATAGATAA CAGCAGCAAC AAACGAAGCT ACAACTCAGA GACAAAGAAA
AAAAAAATAA CATTGTCAGT GCAGGATAAA AATTACAAAG TACTAACATA ATTAAATAAT AATCTAC

[show][hide][copy]CDS

>Vigan.08G014800.01
ATGGGAGAGG TTAAAGTGCT TGGGTTTTGG TCTAGCCCTT TCGTTCATAG GGTGATATGG GCTCTGAAGT TAAAGGGCAT
TAGTTATGAG TACATAGAGA TTGACAGACA CAACAAAGGC GACCTACTTC TGCAATCCAA TCCAGTTTAC AAGAAAGTCC
CAGTGCTTAT TCATGGAGGC AGAGCCATTC CAGAGTCTAT GGTCATCCTT GAATACATCG AAGACACATG GCCACATAAC
CCATTGCTGC CAAAAGACAA CCATCAGAAA GCCTTAGCTC GCTTTTGGAT TAAATTTGGA GAAGATTCGA TCGCCTCTAT
CACTGATATG TTTCTCCGAC CTTACAAAGA TGAACAAGAA AGAGCAAGTG CATGGAAAAG AGCACAAGAA ACTATAACAG
TAATCGAAGA GCAAGGTCTA GGGGAGAAGA AATTCTTTGG AGGCAACAAC ATTGGAATGG TGGACATAGC ATATGGATGC
CTAAGCCATT GGTTGGAAGG CTTGGAGGAA ATTGTTGGGT TGAAATTAAT TGAACCCAAC AGATTTCCTC GGTTGCATGC
GTGGACACAA AACTTCAAAC AAGTTCCTGT CATCAAAGAA AACCTTCCGG ATTATGGGAA ACTGTTGATA CATCTTCAAT
GGCGCAGGCA GCAATAA

[show][hide][copy]PROTEIN

>Vigan.08G014800.01
MGEVKVLGFW SSPFVHRVIW ALKLKGISYE YIEIDRHNKG DLLLQSNPVY KKVPVLIHGG RAIPESMVIL EYIEDTWPHN
PLLPKDNHQK ALARFWIKFG EDSIASITDM FLRPYKDEQE RASAWKRAQE TITVIEEQGL GEKKFFGGNN IGMVDIAYGC
LSHWLEGLEE IVGLKLIEPN RFPRLHAWTQ NFKQVPVIKE NLPDYGKLLI HLQWRRQQ*