GBrowse Details

Vigan.08G015600.01

Basic Information:
Name: Vigan.08G015600.01
Multiple alignment
Variant Information
Position: Chr08:1048573..1050538 (+ strand)
Length: 1966
Functional Information:
Description: Similar to Uncharacterized protein. [C6TNL1, Glycine max]
InterPro: GRAM domain (IPR004182)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.54,0.11,4.89,0.35,4.20,0.19,1.46,3.09
Automatic updates:
Name: NM_001254099 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max GEM-like protein 4-like (LOC100779922), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:1048573..1048959 (+ strand)
Length: 387
Type: five_prime_UTR
Position: Chr08:1048960..1049101 (+ strand)
Length: 142
Type: CDS
Position: Chr08:1049217..1049491 (+ strand)
Length: 275
Type: CDS
Position: Chr08:1049726..1049899 (+ strand)
Length: 174
Type: CDS
Position: Chr08:1049900..1050538 (+ strand)
Length: 639
Type: three_prime_UTR


>Vigan.08G015600.01
CTTTCTCTAA GCCTCTTAGA ATTAATCTTT AAGGTTCCTT TTTTAATTTT GAAAAGGTTG ACTTGCTGTG CTACTTTTTC
CTAAAAGCAG CCAAACAATC CATGCATCAA AATATTCTCT TGAATAACTT TCCCTTTAAG TTGTCATGCC ATCAATTGGT
CATCTAAGGT TGAGTCATCC CCCCAAAGGT GAGATTCACC TCCTAGTTTT CATCTCCTTA AATACTCTTC AGAATAAGAG
GGAACCATCA ACCCAAGTAA CATATCTTCC TTACAAATCT ACCAGAGCTT CTTTCACCCT GGTTTCTCTG ATACAGCAGA
AACTGCTATC AAACTGCTAT CACCTTGGAG ACTGTTAGGC CAAATCTGGT AACACTAATC AACAAACATG CAGACCTCAC
TTCTTCATAA CCTAGTTGTT GGAACTCCAG CCATCTCAGC AACTTATGAT CAAATTCAAA AGCCGGTTAA CAGATACTTG
CCTGGTCCTG CCACTCAATG CCAACGTTCA ACCAAAACAT CAAAACAAAT GAGATTGAGG ACAGATATAT CAAAAACTGT
TATGAGAAAG TTAAGCCTAG GGGCTCATAT TCTTCGAGTG GGGGGAGTGG AAAACGTGTA TAAGCAGTTT TTTAGTGTGA
GAGAAGGAGA AAGGCTTTTG AAAGCTTCAG AGTGTTATCT GTCCACCACT TCTGGTCCTT TAGCAGGTTT TCTTTTCATA
TCCACAGACA AAGTTGCATT CTGTAGTGAG AGATCAATGA AAGTTTTCAC TCAAACAGGC CATATGTTGA GGATCCGTTA
TAAGGTTGCC ATTCCACTGA AGAAGATAAA GTGTGTGAAT CAAAGTAAAA ATGTTCAGAA GCCAACCCAG AAGTACATAG
AGATTGTCAC GGAAGACAAC TTTGATTTCT GGTTTATGGG TGTCTTAAAA TACCAGAAAA CCTTCAAATA TCTTGAGCAG
GCCCTTTCAC AAGCTTAGTG AGCTGAGTAG CAAAATCCAC TTTTCAAAGT CGAAGATTCA TGTTAAGAGG ACAAACAGAC
ACAAAAGATG AAAGCTACTA GAATTTGAAT GCTGTCATTG AAAATGTTGT GGTTTGGTAA AAGGGATTTC AGTTCATTGT
AAATAAGGAA TGGATGTGGT TCATGAGATG CAGACTTGGA TGCCAACAAA TCTCATTGTG AATCCAAGAA TTCAACATCA
TTTGTTGCGG AAGGGACAAA CTTTTAGTAG AGTGAAGGAA AAACAGAGAG AAATTTGAGG CTCAATTACA CATTGATTTA
TAAGCTTTTA GTCAAATTTA TGTATAACTA TTCAGGAGTT TAACGATTAT GTACAGTGAT TGTAAAAAAT CTTACATTGT
CAATCAATGA ATTAATTCTA TTAGTATAAC TTTGCACGTT CTGACTTCAA ATACTATAAA TTCCCAAGAA GAACATCAGT
CATGTGAACT TCACTTGGAT TGTGCACGAA TCAATTTACA ACATAATCAA TAAATTTGGT ATCTTCAGTC AACCTTCGTG
ACCGAGATAG CAAAAAACAA TATATTTTAG GTTAAGAATG GCAAGTATAG GTCATTTTTT ATAGACTTTT CTTTACTTTG
TCCAACTTTA TCTTATG

>Vigan.08G015600.01
ATGCAGACCT CACTTCTTCA TAACCTAGTT GTTGGAACTC CAGCCATCTC AGCAACTTAT GATCAAATTC AAAAGCCGGT
TAACAGATAC TTGCCTGGTC CTGCCACTCA ATGCCAACGT TCAACCAAAA CATCAAAACA AATGAGATTG AGGACAGATA
TATCAAAAAC TGTTATGAGA AAGTTAAGCC TAGGGGCTCA TATTCTTCGA GTGGGGGGAG TGGAAAACGT GTATAAGCAG
TTTTTTAGTG TGAGAGAAGG AGAAAGGCTT TTGAAAGCTT CAGAGTGTTA TCTGTCCACC ACTTCTGGTC CTTTAGCAGG
TTTTCTTTTC ATATCCACAG ACAAAGTTGC ATTCTGTAGT GAGAGATCAA TGAAAGTTTT CACTCAAACA GGCCATATGT
TGAGGATCCG TTATAAGGTT GCCATTCCAC TGAAGAAGAT AAAGTGTGTG AATCAAAGTA AAAATGTTCA GAAGCCAACC
CAGAAGTACA TAGAGATTGT CACGGAAGAC AACTTTGATT TCTGGTTTAT GGGTGTCTTA AAATACCAGA AAACCTTCAA
ATATCTTGAG CAGGCCCTTT CACAAGCTTA G

>Vigan.08G015600.01
MQTSLLHNLV VGTPAISATY DQIQKPVNRY LPGPATQCQR STKTSKQMRL RTDISKTVMR KLSLGAHILR VGGVENVYKQ
FFSVREGERL LKASECYLST TSGPLAGFLF ISTDKVAFCS ERSMKVFTQT GHMLRIRYKV AIPLKKIKCV NQSKNVQKPT
QKYIEIVTED NFDFWFMGVL KYQKTFKYLE QALSQA*