VIGGS:GBrowse

Vigan.08G019400.01

Basic Information:

Name:	Vigan.08G019400.01 Multiple alignment Variant Information
Position:	Chr08:1404369..1406484 (+ strand)
Length:	2116

Functional Information:

Description:	Similar to Mitochondrial protein import protein ZIM17. [W9QBV3, Morus notabilis.]
GO:	Molecular Function: zinc ion binding (GO:0008270)
InterPro:	Zinc finger, DNL-type (IPR007853)
InterPro:	Mitochondrial import protein TIM15 (IPR024158)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:101.35,26.85,44.27,146.17,17.38,33.58,14.50,26.41
Arabidopsis thaliana homolog:	AT5G27280.1

Automatic updates:

Name:	NM_001248165 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527113 (LOC100527113), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001249618 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max DNL zinc finger protein (LOC100527474), transcript variant 2, mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:1404369..1404465 (+ strand)
Length:	97
Type:	five_prime_UTR

Position:	Chr08:1404466..1404595 (+ strand)
Length:	130
Type:	CDS

Position:	Chr08:1404675..1404760 (+ strand)
Length:	86
Type:	CDS

Position:	Chr08:1405193..1405447 (+ strand)
Length:	255
Type:	CDS

Position:	Chr08:1406178..1406348 (+ strand)
Length:	171
Type:	CDS

Position:	Chr08:1406349..1406484 (+ strand)
Length:	136
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G019400.01
TTTAGAAATT AGAAATAAGA AGCTTAGACA AGGAATTGGA TTCTTGGTTT TGTTTACTTT AGTTTGTTCT GTCTGAGAAG
ACAACACAAT TTTATTGATG ATGGAAACCT TGGCCACATC TTCTTCTGCA ACTCTTCCAT CTTCCTCTTC TCCCTTTTCG
ATTTTCCCTT CAAGAAGAAC CTCTCTTTTT CCTTCCAAGA CTCTCCAATT TCGTTTACCC TCCAAGCGTG ATGATGCTCT
CGATTCAGAC GCCAAGGATA ACATCCTTCC AATTATCAAT GATCGCTGCC TCTCCCTTTC GCCTCTGTCC AAAGATGCTG
CGATGGGACT GGTACTGAGT GCTGCGGTGG GTAGAGGATG GACCACTGGT TCAGGGATGG AAGGTCCCTC TGTTCCTGCA
GTTGGTAGGG GTAATGAATC GGGGAACATC TCCACTTTCC CATGGTCTCT CTTCACCAAA TCCCCTAGGA GAAGGATGCT
GGTGGCTTTT ACTTGTACCA TCTGTGGCCA GCGAACTACA CGAGCCATTA ATCCCCATGC TTACACTGAT GGCACTGTCT
TTGTGCAGTG CTGTGGATGC AATGCGTATC ATAAGCTGGT GGATCACTTG AACTTGTTTC AGGAGACAAA TTGCTATTTG
AATTCAAGTT TTAAGTTTAA AGGAGAAGGA TGGGATGATC TTAAGTTTAG GTATATGGAT GATAACGATG ACGACAATGA
CATATTTCCC ATTTCATAAG TGAATTGTCA TATGGATCAT ATACCTTCTG CCTGATTGTA TCGAAGTTCA GTTTAGATGT
CTTGTATATT CTCTAGGTTT TCATGCTTTA TAGTAAAATT TGTACGGGAC TCGTACAGTA ACATGTTTAT ATATA

[show][hide][copy]CDS

>Vigan.08G019400.01
ATGATGGAAA CCTTGGCCAC ATCTTCTTCT GCAACTCTTC CATCTTCCTC TTCTCCCTTT TCGATTTTCC CTTCAAGAAG
AACCTCTCTT TTTCCTTCCA AGACTCTCCA ATTTCGTTTA CCCTCCAAGC GTGATGATGC TCTCGATTCA GACGCCAAGG
ATAACATCCT TCCAATTATC AATGATCGCT GCCTCTCCCT TTCGCCTCTG TCCAAAGATG CTGCGATGGG ACTGGTACTG
AGTGCTGCGG TGGGTAGAGG ATGGACCACT GGTTCAGGGA TGGAAGGTCC CTCTGTTCCT GCAGTTGGTA GGGGTAATGA
ATCGGGGAAC ATCTCCACTT TCCCATGGTC TCTCTTCACC AAATCCCCTA GGAGAAGGAT GCTGGTGGCT TTTACTTGTA
CCATCTGTGG CCAGCGAACT ACACGAGCCA TTAATCCCCA TGCTTACACT GATGGCACTG TCTTTGTGCA GTGCTGTGGA
TGCAATGCGT ATCATAAGCT GGTGGATCAC TTGAACTTGT TTCAGGAGAC AAATTGCTAT TTGAATTCAA GTTTTAAGTT
TAAAGGAGAA GGATGGGATG ATCTTAAGTT TAGGTATATG GATGATAACG ATGACGACAA TGACATATTT CCCATTTCAT
AA

[show][hide][copy]PROTEIN

>Vigan.08G019400.01
MMETLATSSS ATLPSSSSPF SIFPSRRTSL FPSKTLQFRL PSKRDDALDS DAKDNILPII NDRCLSLSPL SKDAAMGLVL
SAAVGRGWTT GSGMEGPSVP AVGRGNESGN ISTFPWSLFT KSPRRRMLVA FTCTICGQRT TRAINPHAYT DGTVFVQCCG
CNAYHKLVDH LNLFQETNCY LNSSFKFKGE GWDDLKFRYM DDNDDDNDIF PIS*