GBrowse Details

Vigan.08G021500.01

Basic Information:
Name: Vigan.08G021500.01
Multiple alignment
Variant Information
Position: Chr08:1604751..1607332 (+ strand)
Length: 2582
Functional Information:
Description: Similar to Uncharacterized protein. [I1NF98, Glycine max]
InterPro: mRNA splicing factor SYF2 (IPR013260)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:241.38,108.36,34.03,48.02,30.98,26.11,26.36,39.46
Arabidopsis thaliana homolog: AT2G16860.1
Automatic updates:
Name: NM_001254969 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max pre-mRNA-splicing factor syf2-like (LOC100787714), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:1604751..1604993 (+ strand)
Length: 243
Type: five_prime_UTR
Position: Chr08:1604994..1605117 (+ strand)
Length: 124
Type: CDS
Position: Chr08:1605375..1605589 (+ strand)
Length: 215
Type: CDS
Position: Chr08:1605672..1605912 (+ strand)
Length: 241
Type: CDS
Position: Chr08:1606442..1606578 (+ strand)
Length: 137
Type: CDS
Position: Chr08:1606671..1606898 (+ strand)
Length: 228
Type: CDS
Position: Chr08:1606899..1607332 (+ strand)
Length: 434
Type: three_prime_UTR


>Vigan.08G021500.01
AGGTTCGTAT TCTCTTCTCT TTCGTTTAAT GTTCATTGCG AAGTGCGAAC CCAACATTAA GCAACAACAG ATTCCTCTAT
TTCGATTTCT CCTGTAATAT ATGTTCTTTC AATTCCAATT TCTGTTTTCG CTACTTGTTG CTTTCAGTTT TTGAAATAAG
AGTTTTAATT AGGGTTTTGA CGAAAACGTG TTTACTTGCT ATGCGGTAAC GCCACAGATC AGGGGATAAA TTCTCTGCGC
GACATGTTCG GGGAACGAGC AGTGCATCCC GATTGCCGGA ATGCCAGTAA CCCTTTTCAT GAATGCAGTG ATTACTGTTT
TAGAGTAATA GCTGAAGCCA AAATAAGGTC GCAACAACGA CAATCTGAAC TTGGCCAAGC TAGTGGTGGA AGTGACTCTA
AGCAAGACAT CCCAGATGAG TCACACGCGG ATGAGGAAAT ACATGATGAC AGACCCAATT TTGAAGAAAA CACTGACAGT
GATCCTGACC AGCCTGCTGA ACAGGAAGCT GAGCAAATAG AGATTGACTA CACAAAACTT TCTGGGAGAC AGAAAAAGTG
GATGGAATTG AGAGCGAAAA TGCAAGAAGC AAAAAAACGT AATCAAATTG AAATAGCTGC TGAAAAAAAG AGGATGGAAG
CTCCAACCGA GTCTAGGGGT GTTTCAAAAC AGAAATGGCT TGAGGATAGG AAGAAAAAGA TTGGAAAACT TCTTGATGCA
AATGGACTGG ATATGACAAA CGCATATATG CTTGACACAC AGGAAGCAGC AGAAGTAAAA TACAAGAAAT GGGAGAAGGA
TCCTGCTCCA TTCGGATGGG ATGTATTCAA TCAGAAGTCA TTATACAATG CGTACAAAAA GCGGACAAAG AATGTTGAAG
TCGATGTAGA AGAATATAAT AGAATGAAAG AGGCTGATCC GGAGTTCTAC CGAGATGCTT CGAGTCTCCA GTACGGAAAG
GCTCCAAAAA TCTCAGAGGA GAAGGTTGAC AGGATGGTAC AGGAGCTCAA GGATAGGGAA GAGAAGCGCA AGTCATTTAG
CAGGAGAAGA CGGTTTCACG AAGAGAAGGA TATCGACTCA ATCAATGACC GTAATGAGCA TTTCAACAAG AAGATCGAGC
GAGCCTTTGG TAAATACACG CTGGAGATTA AAAATAATCT TGAGCGAGGA ACTGCATTAC CTGATTAAGG TTATGTGCTG
AAATATAAAA TGTTCTGATA CTGAAAAGTC TCAATGGTGG ATTGCACTCT TTAGAGTGCC TTTCGATCAT GTAATATTAT
AGTCTAATAC TGTGCAATGC ACATCTGGAG TCATTTTGAA CTTCAAGTAG TGCATGCTTA CTTGGGACCT GGGTTCCTCG
CAGTGACACC CTTCCCATCA TTACATAAAT ATGCTGTTTC TAAGGAGAGT TTATACCTCC TCACGTATAT TCAAGCCTGA
GTGTCTGTTT GGGGATAGGT ATCTTCCTCC ATCCTTTCCT TTGGGATCGT GTATGCATTT TGATGTTTGG ATTGAAGGAA
AGATTTGAAT GAGATGGATT GGAAATCATA CAATGAAATT TTATTAAGTT ATGCTGAATG GATTACTTAG TTTATAATGG
AATTTTATTG AGTTAAAAGA AA

>Vigan.08G021500.01
ATGTTCGGGG AACGAGCAGT GCATCCCGAT TGCCGGAATG CCAGTAACCC TTTTCATGAA TGCAGTGATT ACTGTTTTAG
AGTAATAGCT GAAGCCAAAA TAAGGTCGCA ACAACGACAA TCTGAACTTG GCCAAGCTAG TGGTGGAAGT GACTCTAAGC
AAGACATCCC AGATGAGTCA CACGCGGATG AGGAAATACA TGATGACAGA CCCAATTTTG AAGAAAACAC TGACAGTGAT
CCTGACCAGC CTGCTGAACA GGAAGCTGAG CAAATAGAGA TTGACTACAC AAAACTTTCT GGGAGACAGA AAAAGTGGAT
GGAATTGAGA GCGAAAATGC AAGAAGCAAA AAAACGTAAT CAAATTGAAA TAGCTGCTGA AAAAAAGAGG ATGGAAGCTC
CAACCGAGTC TAGGGGTGTT TCAAAACAGA AATGGCTTGA GGATAGGAAG AAAAAGATTG GAAAACTTCT TGATGCAAAT
GGACTGGATA TGACAAACGC ATATATGCTT GACACACAGG AAGCAGCAGA AGTAAAATAC AAGAAATGGG AGAAGGATCC
TGCTCCATTC GGATGGGATG TATTCAATCA GAAGTCATTA TACAATGCGT ACAAAAAGCG GACAAAGAAT GTTGAAGTCG
ATGTAGAAGA ATATAATAGA ATGAAAGAGG CTGATCCGGA GTTCTACCGA GATGCTTCGA GTCTCCAGTA CGGAAAGGCT
CCAAAAATCT CAGAGGAGAA GGTTGACAGG ATGGTACAGG AGCTCAAGGA TAGGGAAGAG AAGCGCAAGT CATTTAGCAG
GAGAAGACGG TTTCACGAAG AGAAGGATAT CGACTCAATC AATGACCGTA ATGAGCATTT CAACAAGAAG ATCGAGCGAG
CCTTTGGTAA ATACACGCTG GAGATTAAAA ATAATCTTGA GCGAGGAACT GCATTACCTG ATTAA

>Vigan.08G021500.01
MFGERAVHPD CRNASNPFHE CSDYCFRVIA EAKIRSQQRQ SELGQASGGS DSKQDIPDES HADEEIHDDR PNFEENTDSD
PDQPAEQEAE QIEIDYTKLS GRQKKWMELR AKMQEAKKRN QIEIAAEKKR MEAPTESRGV SKQKWLEDRK KKIGKLLDAN
GLDMTNAYML DTQEAAEVKY KKWEKDPAPF GWDVFNQKSL YNAYKKRTKN VEVDVEEYNR MKEADPEFYR DASSLQYGKA
PKISEEKVDR MVQELKDREE KRKSFSRRRR FHEEKDIDSI NDRNEHFNKK IERAFGKYTL EIKNNLERGT ALPD*