GBrowse Details

Vigan.08G024700.01

Basic Information:
Name: Vigan.08G024700.01
Multiple alignment
Variant Information
Position: Chr08:1859941..1861562 (+ strand)
Length: 1622
Functional Information:
Description: Similar to Uncharacterized protein. [K7LLV5, Glycine max]
InterPro: Nucleic acid-binding, OB-fold (IPR012340)
Replication factor A protein 3 (IPR013970)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.29,0.25,4.00,0.54,5.25,4.28,6.42,0.95
Automatic updates:
Name: NM_001248346 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306197 (LOC100306197), mRNA.
PubMed ID: -
Status: Known Variant
Name: PQ855784 NCBI(nuccore)
Organism: Vigna radiata var. radiata
Description: Vigna radiata var. radiata replication protein A 14 kDa subunit B (RPA14) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:1859941..1860415 (+ strand)
Length: 475
Type: five_prime_UTR
Position: Chr08:1860416..1860788 (+ strand)
Length: 373
Type: CDS
Position: Chr08:1861067..1861131 (+ strand)
Length: 65
Type: CDS
Position: Chr08:1861132..1861562 (+ strand)
Length: 431
Type: three_prime_UTR


>Vigan.08G024700.01
TATATATATA TATAAAGTGC GTTGTTGGGA TCTGAGGGAG AAAAGGGTAA AAAGAAATAT AGTAGTTTCC CGCCAAACGA
AGAAGCAATC GTTTAAGGTT CCCGCTCCTT CTTACGCGCA TTTTCCGTTT CAAATTCCAT TTCTCAGTGT CTCTGCCAAA
CTACTCAGCA AACGCAAAGG GTTTCTTTCC AATAATTCAA AGGTTCACTA TTCCCTCTCT TATTCTACTC TGCTTCGTTT
TTATTTTTCA TTCTGAAACA ATCACTACAG CGTAATTCTG AATTATTCAC CTATTCCGTT AATTTCGTTC GTTTGAGTTT
TTATATTTAG ACTTTTATTC ACTGATTTGC ATTAACTTTA GGGTTAGGCG ATCTTTGTGC ACTCAACATG TTTGTGTAAA
TTTCTCTTAG ACTATAATTT GTCGCAGTTG TTCGTTTTCT CTTCCACTGT TAAATGTATT TGTGCTTCGA CGAAAATGGA
GACCAGTTTA TTTTTTCAGA ACATTCAACC ATTATTTCCA TGTAAGCAAA TAAAACATTT GTTTAAGCTT TGCTTTCAAA
GCTTGATTTT TCCCCCCTTT TCGTTTCAGG CCATGGACAC GTCAAATCCT GCTGTATTTG TGAATGCTCA GTTGATTCCC
AACTTCATAG GGAAGAGAGT AAGAACAGTG GTTCAGGTGA ATCAATATGG TGGTGAGGTT GCCACAGCAA AATCCACCGA
TGACTCTCAA TTAACAATAA AAGGGTTGCC GCAAGTCCCC ATTATGAATT TTATTGAGGT AATCGGTATT GCTGAAAGCA
GCAACTCTAT TGATGCCGAA CTATGGACCG ACTTTGGCAA CACATTTGAT ACCAACTCTT TCAATCAGTT GTGCCAACTA
GCAAATGGTG AATTCAAAGG CCTGTTTCTC TAGGGACATC AAAGAATGCC GACTCAGCAA CTGGATGACG TTTGAAGCTT
TTGTTTTACA TGCCAAGGCA CCCGTTTACA TGTAAATCTA GGAATTATAT TTGAGTTTAT GGTATCCCCA GAATAGCCGA
GCAAGCATGC TTTCTACAAA CTATTACGCT TTTCGAAATC TCCTTTAACT TACATCGTGT TATATGTCTA GTTTGGCTTA
TGTCTGCAAC TGTCTCCAGT GTCTTCAATT ACACTCCTAT GAAAAAGGTA TTATTTAGAT TATTTTACTC TTCACCTAAC
TAAAATATAT TGGATATTTT ACCTTCCATT CATGTTTATT GTTGTATTTT TTTAGTACTG TGTAGATTTA CTCTAGTCCA
TAGATGCTTT ACTTTATTAA GTACCTATGT AGCTTATTGG CAGTAGTTTT GTTCACTATT TTAA

>Vigan.08G024700.01
ATGGAGACCA GTTTATTTTT TCAGAACATT CAACCATTAT TTCCATGTAA GCAAATAAAA CATTTGTTTA AGCTTTGCTT
TCAAAGCTTG ATTTTTCCCC CCTTTTCGTT TCAGGCCATG GACACGTCAA ATCCTGCTGT ATTTGTGAAT GCTCAGTTGA
TTCCCAACTT CATAGGGAAG AGAGTAAGAA CAGTGGTTCA GGTGAATCAA TATGGTGGTG AGGTTGCCAC AGCAAAATCC
ACCGATGACT CTCAATTAAC AATAAAAGGG TTGCCGCAAG TCCCCATTAT GAATTTTATT GAGGTAATCG GTATTGCTGA
AAGCAGCAAC TCTATTGATG CCGAACTATG GACCGACTTT GGCAACACAT TTGATACCAA CTCTTTCAAT CAGTTGTGCC
AACTAGCAAA TGGTGAATTC AAAGGCCTGT TTCTCTAG

>Vigan.08G024700.01
METSLFFQNI QPLFPCKQIK HLFKLCFQSL IFPPFSFQAM DTSNPAVFVN AQLIPNFIGK RVRTVVQVNQ YGGEVATAKS
TDDSQLTIKG LPQVPIMNFI EVIGIAESSN SIDAELWTDF GNTFDTNSFN QLCQLANGEF KGLFL*