GBrowse Details

Vigan.08G025600.01

Basic Information:
Name: Vigan.08G025600.01
Multiple alignment
Variant Information
Position: Chr08:1929159..1931270 (- strand)
Length: 2112
Functional Information:
Description: Similar to Uncharacterized protein. [Q8S8Z9, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Myb domain, plants (IPR006447)
Homeodomain-like (IPR009057)
Myb-like domain (IPR017877)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:23.51,24.92,9.86,1.88,4.68,64.09,5.93,2.60
Arabidopsis thaliana homolog: AT5G04760.1
Automatic updates:
Name: KT031197 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max clone HN_CCL_91 MYB/HD-like transcription factor (Glyma10g42450.1) mRNA, partial cds.
PubMed ID: 26268547 NCBI(pubmed)
Status: Known Variant
Name: NM_001250174 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max syringolide-induced protein 1-3-1B (1-3-1B), mRNA.
PubMed ID: 14586656 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:1929159..1929572 (- strand)
Length: 414
Type: three_prime_UTR
Position: Chr08:1929573..1929909 (- strand)
Length: 337
Type: CDS
Position: Chr08:1930641..1931032 (- strand)
Length: 392
Type: CDS
Position: Chr08:1931033..1931270 (- strand)
Length: 238
Type: five_prime_UTR


>Vigan.08G025600.01
CGCGTTTTTT TCCCAAATCT CTCACCAAAC GCAGAAGCGA AATCTCCTAG AAAGCGAGAC TCTTTCTCTC TTTCTCTTTC
TTTTTTTTTC TCTCTCTCTC TCTCTGGTTT TTTGGTTTCG CCTAGTCAGC GAAAACAAAG AAACAAACAA AGTGTTGGAA
CACGAAACAC GACCCCTAGA GAAGCAGATC CTCACCTTGT TCATTGTTTT CAATTCAACT GAGAACACGA CACCCACGAT
GTTTCACGAG AGCAGCGTGA CTCGGTGGCA GCCACAGCCG GTTCAGCCCA CTGAGTGGAC TCGCTACCAC GACAAGCTCT
TCGAGCGCGC TCTGCTCCTC GTGCCCGAGG ACCTCCCTGA CCGCTGGAAC CAGATCGCCG TCCACGTTCC TGGCAAAACT
CCGGCGGAGG TCAGGGAACA CTACGACGCG CTCGTCCACG ACGTCTTCGA GATTGACTCT GGCCGAGTCG AGGTCCCGAG
TTACGTGGAT GACTTGGCGC CACCACAACT CAGTGGCGGT GCCGGGAATT CTGCGTGGGA CAGCGCTAAT CAGATCTCAT
TCGGGTCCAA ACCCAAGCAG GGCGAGACCG AAAGGAAGAA AGGCACGCCT TGGACTGAAG AGGAACACAG GCTATTTCTG
ATCGGGCTGA GCAAATTCGG AAAAGGAGAT TGGAGAAGCA TTTCAAGAAA CGTGGTTGTG ACAAGAACAC CGACTCAAGT
AGCCAGCCAT GCTCAAAAAT ACTTTCTCCG TCAGAATTCT GGGAAGAAGG AGAGGAAAAG ATCAAGCATC CATGACATAA
CCACTGTGGA TAGTAACTCT CTGCCTGTGC CCATTGACCA GAACTGGGTT CCTCCACCTG GTACTTCAAT GCAGCAGTCA
TCACAAGACA TGCTGTCGTA CGCTTCCAGC AGCATGCAGG ATCAAATGGG TCCATTTGGG TATTCGAACT ATGGCTTTGA
AATGTAGAGA ATGGCAGTGG ATACAAGTTT CGCTGTATAG TGTTGTAGCT TTGCGTCGTA TCGTATGTTT GTAAAGCTTC
TATGCTTTCG CTAGCTGACA AGGGTCATTA GGAGTGTTGC TGTTGCTAAT TATTGAATAT TTTAGTGTAG GTTATGTTCT
GAGTACGTGT ACCTTGGTGA ATCCTATGAA TGAAGCAGTG AGGATGAAAG GGTTACTAGT CAATCTTTTA GGATGAATCG
AATAGTAATG GAAATTATTT TCATTTGCCA AATTCAATTA TTGCTCTGCA ATTAGGATTA AAGCATATAC TATGCATTGA
ATCAGCGATC AAAGCCTGTT TTGATGGTTG TTTCGACTTT ATGGTAAAAG CCTGTAATCT TATTAAAGGT AATGAAAAGC
GTTGCAGAAC TTTTATCAAG C

>Vigan.08G025600.01
ATGTTTCACG AGAGCAGCGT GACTCGGTGG CAGCCACAGC CGGTTCAGCC CACTGAGTGG ACTCGCTACC ACGACAAGCT
CTTCGAGCGC GCTCTGCTCC TCGTGCCCGA GGACCTCCCT GACCGCTGGA ACCAGATCGC CGTCCACGTT CCTGGCAAAA
CTCCGGCGGA GGTCAGGGAA CACTACGACG CGCTCGTCCA CGACGTCTTC GAGATTGACT CTGGCCGAGT CGAGGTCCCG
AGTTACGTGG ATGACTTGGC GCCACCACAA CTCAGTGGCG GTGCCGGGAA TTCTGCGTGG GACAGCGCTA ATCAGATCTC
ATTCGGGTCC AAACCCAAGC AGGGCGAGAC CGAAAGGAAG AAAGGCACGC CTTGGACTGA AGAGGAACAC AGGCTATTTC
TGATCGGGCT GAGCAAATTC GGAAAAGGAG ATTGGAGAAG CATTTCAAGA AACGTGGTTG TGACAAGAAC ACCGACTCAA
GTAGCCAGCC ATGCTCAAAA ATACTTTCTC CGTCAGAATT CTGGGAAGAA GGAGAGGAAA AGATCAAGCA TCCATGACAT
AACCACTGTG GATAGTAACT CTCTGCCTGT GCCCATTGAC CAGAACTGGG TTCCTCCACC TGGTACTTCA ATGCAGCAGT
CATCACAAGA CATGCTGTCG TACGCTTCCA GCAGCATGCA GGATCAAATG GGTCCATTTG GGTATTCGAA CTATGGCTTT
GAAATGTAG

>Vigan.08G025600.01
MFHESSVTRW QPQPVQPTEW TRYHDKLFER ALLLVPEDLP DRWNQIAVHV PGKTPAEVRE HYDALVHDVF EIDSGRVEVP
SYVDDLAPPQ LSGGAGNSAW DSANQISFGS KPKQGETERK KGTPWTEEEH RLFLIGLSKF GKGDWRSISR NVVVTRTPTQ
VASHAQKYFL RQNSGKKERK RSSIHDITTV DSNSLPVPID QNWVPPPGTS MQQSSQDMLS YASSSMQDQM GPFGYSNYGF
EM*