GBrowse Details

Vigan.08G027300.01

Basic Information:
Name: Vigan.08G027300.01
Multiple alignment
Variant Information
Position: Chr08:2108844..2112992 (- strand)
Length: 4149
Functional Information:
Description: Similar to uncharacterized protein. [C6T4D7, Glycine max]
GO: Cellular Component: membrane (GO:0016020)
InterPro: Uncharacterised protein family UPF0016 (IPR001727)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.37,13.30,34.93,32.56,66.61,44.00,35.58,27.39
Arabidopsis thaliana homolog: AT1G25520.1
Automatic updates:
Name: BT092627 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-11K20 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001249381 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527455 (LOC100527455), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2108844..2109429 (- strand)
Length: 586
Type: three_prime_UTR
Position: Chr08:2109430..2109501 (- strand)
Length: 72
Type: CDS
Position: Chr08:2109844..2109916 (- strand)
Length: 73
Type: CDS
Position: Chr08:2110179..2110240 (- strand)
Length: 62
Type: CDS
Position: Chr08:2110326..2110370 (- strand)
Length: 45
Type: CDS
Position: Chr08:2110522..2110590 (- strand)
Length: 69
Type: CDS
Position: Chr08:2111232..2111279 (- strand)
Length: 48
Type: CDS
Position: Chr08:2111366..2111402 (- strand)
Length: 37
Type: CDS
Position: Chr08:2111502..2111590 (- strand)
Length: 89
Type: CDS
Position: Chr08:2111814..2111861 (- strand)
Length: 48
Type: CDS
Position: Chr08:2112012..2112071 (- strand)
Length: 60
Type: CDS
Position: Chr08:2112537..2112605 (- strand)
Length: 69
Type: CDS
Position: Chr08:2112702..2112719 (- strand)
Length: 18
Type: CDS
Position: Chr08:2112720..2112992 (- strand)
Length: 273
Type: five_prime_UTR


>Vigan.08G027300.01
GCAGTCTTTA GAAATAGAAA AATGTGAAAA GAGAAGCATC TTTCTATTGC TATGGTTATT TTCTTTTTTA TCAAGATAGA
AGGGAATTGA ATTCCATGCT GTGCAAAAAA ATACATTTTT TTTAAAGGGA AAGCACTCAC ACGCGCACAT GTCACTCTGA
GCTTTTGTCA CCTTCCTTCT ACCTTCTGTT TCAGGCGACT TTCACTTCAA CCAACTACAC AACACAACAC AGTCTTCAAT
TCTCTCTGAG TCCTTCTTCT TAGCTCGGCC AACATGAGTT CAATCGTTCA GGGTTTCACG AAGTCCTTGG CCATGACTAT
TCTCTCGGAG ATCGGCGACA AAACATTTTT TGCTGCTGCG ATATTGGCTA TGAGGCACCC ACGACGTCTA GTCTTATCAG
GTTGCTTATC ATCTTTGATT GTGATGACCA TTCTGTCTGC TCTTGTTGGC TGGGCTGCTC CTAATCTGAT TTCCCGTACT
TGGACTCATC ACATTACTAC ATTGTTATTC TTGGGGTTTG GGCTTTGGTC CCTGAAAGAT GCATTATTTG AACAAGGGGA
TGCTGAAGAA TTGGCTGAAG TTGAAGCTAA ATTGGATAAA GATTGGAAGG CTAACAATGG AGCTGCAAAA AATAGCAAAA
AGGTTGATGA TGTCGCTAAA AAGCAGCAGC GGTCATTTTT ATCTCAGTTT TTCTCTCCTA TCTTTCTACA GGCATTTTCT
ATCACTTTTT TTGGTGAATG GGGTGACAAG AGCCAGCTGG CTACCATAGG TTTGGCTGCA GATGAGAATC CATTTGGTGT
TGTTCTCGGG GGGATTCTGG GACAAGCGTT GTGCACCTCT GCTGCTGTTG TTGGAGGGAA GAGTTTAGCT TCTCGGATAT
CTGAAAAAAT TGTTGCACTC TCCGGCGGAA TTCTTTTTAT TGTTTTTGGA ATTCAATCAT ACCTTTCTCC TGTGGAATCA
TGAAGGGCTC TGCTATTGGT TAGTGATTAT TCTTTGTGCA TTTTACTAGA CATGATTGAA AACATGTTTG TTATAATGAT
TGGAACTGGT TGCCGGAAGA CCTCAGCTTC GTGTCTAATC CTCCTGGGTC GTAGATTTCA TTCTCTTACC ACTGTAGAAC
CAGAGCCAAA TTCAACATGT TGTCAACTTG AGTAGATTGT TCTTTCTAGA TAAGCCGTGC CTTTACATAT TCTCTCGTTG
TACTCTTTGC TCCATCAATT AAATCCATGT GCTAATTTCC AATGCTTGAG GAATATTATA AAAGAACACG TTTTTTTGTT
TTTGGGGTTA AGTTGGGGAG GAAAACGAAG ATTGCTTGTA TGCGTATGAT GTTGACACTG TTGAATTAAT GCTCCCGGGG
TGATCTTTTT GTCATTGCTT GTGTAGAGGG GATGAAAAAG CTTTTCCGTC ACTGGAGCAA TTGGTCAAAG TGAAACTGGT
AGGTCTCAAT TTGAGTGAAC TTGATATGTA CAATAATCTT TCCTTTCAAA GTTCATATAA AAATGGGTAG AACCCTCGCT
CCCCAAGTGC TGTAACTTGA TATCGCATG

>Vigan.08G027300.01
ATGAGTTCAA TCGTTCAGGG TTTCACGAAG TCCTTGGCCA TGACTATTCT CTCGGAGATC GGCGACAAAA CATTTTTTGC
TGCTGCGATA TTGGCTATGA GGCACCCACG ACGTCTAGTC TTATCAGGTT GCTTATCATC TTTGATTGTG ATGACCATTC
TGTCTGCTCT TGTTGGCTGG GCTGCTCCTA ATCTGATTTC CCGTACTTGG ACTCATCACA TTACTACATT GTTATTCTTG
GGGTTTGGGC TTTGGTCCCT GAAAGATGCA TTATTTGAAC AAGGGGATGC TGAAGAATTG GCTGAAGTTG AAGCTAAATT
GGATAAAGAT TGGAAGGCTA ACAATGGAGC TGCAAAAAAT AGCAAAAAGG TTGATGATGT CGCTAAAAAG CAGCAGCGGT
CATTTTTATC TCAGTTTTTC TCTCCTATCT TTCTACAGGC ATTTTCTATC ACTTTTTTTG GTGAATGGGG TGACAAGAGC
CAGCTGGCTA CCATAGGTTT GGCTGCAGAT GAGAATCCAT TTGGTGTTGT TCTCGGGGGG ATTCTGGGAC AAGCGTTGTG
CACCTCTGCT GCTGTTGTTG GAGGGAAGAG TTTAGCTTCT CGGATATCTG AAAAAATTGT TGCACTCTCC GGCGGAATTC
TTTTTATTGT TTTTGGAATT CAATCATACC TTTCTCCTGT GGAATCATGA 

>Vigan.08G027300.01
MSSIVQGFTK SLAMTILSEI GDKTFFAAAI LAMRHPRRLV LSGCLSSLIV MTILSALVGW AAPNLISRTW THHITTLLFL
GFGLWSLKDA LFEQGDAEEL AEVEAKLDKD WKANNGAAKN SKKVDDVAKK QQRSFLSQFF SPIFLQAFSI TFFGEWGDKS
QLATIGLAAD ENPFGVVLGG ILGQALCTSA AVVGGKSLAS RISEKIVALS GGILFIVFGI QSYLSPVES*