GBrowse Details

Vigan.08G028500.01

Basic Information:
Name: Vigan.08G028500.01
Multiple alignment
Variant Information
Position: Chr08:2192859..2196602 (- strand)
Length: 3744
Functional Information:
Description: Similar to glycolipid transfer protein domain-containing protein 1-like. [XP_004497102.1, Cicer arietinum]
GO: Biological Process: glycolipid transport (GO:0046836)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: glycolipid transporter activity (GO:0017089)
Molecular Function: glycolipid binding (GO:0051861)
InterPro: Glycolipid transfer protein domain (IPR014830)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.13,2.04,2.20,0.90,0.98,0.31,1.35,1.77
Arabidopsis thaliana homolog: AT4G39670.1
Automatic updates:
Name: NM_001253021 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max glycolipid transfer protein domain-containing protein 1-like (LOC100813626), mRNA.
PubMed ID: 14624337 NCBI(pubmed)
Status: Known Variant
Name: NM_001253330 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative glycolipid transfer protein (LOC100818548), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2192859..2193070 (- strand)
Length: 212
Type: three_prime_UTR
Position: Chr08:2193071..2193177 (- strand)
Length: 107
Type: CDS
Position: Chr08:2194445..2194590 (- strand)
Length: 146
Type: CDS
Position: Chr08:2194959..2195131 (- strand)
Length: 173
Type: CDS
Position: Chr08:2196160..2196369 (- strand)
Length: 210
Type: CDS
Position: Chr08:2196370..2196602 (- strand)
Length: 233
Type: five_prime_UTR


>Vigan.08G028500.01
AGGAAGTTAG CAGCGGTGGA CGGTTGTCTT TCACGAGTTT GAGGGAAATG AATTGAAAGG AATCTTCTGG TAGAGCGCAT
TTGTAGCGAA TGTTCCCTCA GCGTCTAAAC ACGCGCTTTC CTTTTTACCA TTGCAAATTC GACTTCCAAT TCCTTTTTGA
CATTTGAGAC GTTCGCAAAC ACATTGAGAT TAAAGGAATC GATAAGCGAT CCAGCGATCG AAGGAAGAAT AGGATGCCCG
AGATGGACGA GGGCGAGGTT ATAGAACAAC CTCTGACGGC CATAGCAGAG GCGTTTGAGG AGCTGTCGAA GTGGATGAAG
GAGAATAGCG ACGGCCGCCA CATTCGCCTC GACAATTTCT GCGAGGTCGC CTCTCTCGTC TCCGTTCTCT TCCGTTGTCT
CGGCCTCGCT TTCAAATTCG CTGAATTGGA ATACGTCGCC AAGCTAGAAG GACTATTGGA AGCATCAAAG ACATGTCCCA
CTCTACAAGA TATTCTTGAA GTTGATGTTG GCAATGATAC AGTGAAAACC TCTGGAAGCT ATTCCCGTAA TCTGCGTAGA
GTTCGGCAGG GTCTTGATCT CGTCAGAGCT ATATTCGAAC AACTTTTGTC TACTGAAGAT TCTTCTCTAA AAGACGTGGC
TTCAACAGCT TATGGGCAGG TATGTGCACC ATACCACACA TGGGCGGTAC GAACAGCTGT GTACGCTGGG ATGTATACAC
TTCCAACGAG AGAACAACTT TTGATGAAGC TCAATGAAAC AGAGCAATCA GCCGAGAAGA AGATGAAAAG GTATATTGCT
GCCTCACTTC CGATTATAGA ATACATTGAT AGTCTGTACC TTTCTCGAAA TATTACGTTG GACTGGTGAG TTTATAAAAA
GAAAAGAGAA AATCTACCAA GTTGAATGCC CTTTCTGTTT ATTAGAAGGC AGTGTCGTGG CTCCGTTGTT GTATATATCA
GCAACCTAAG TACACATGCT TCGTTTTTTG TACTATATAT ATAAAAGATG TAATTATGTT AGTTCTACTC AACGGCTCTT
GGCCCTTTAG AGATACCAAA TAGATTTGTA CTAAATTACT A

>Vigan.08G028500.01
ATGCCCGAGA TGGACGAGGG CGAGGTTATA GAACAACCTC TGACGGCCAT AGCAGAGGCG TTTGAGGAGC TGTCGAAGTG
GATGAAGGAG AATAGCGACG GCCGCCACAT TCGCCTCGAC AATTTCTGCG AGGTCGCCTC TCTCGTCTCC GTTCTCTTCC
GTTGTCTCGG CCTCGCTTTC AAATTCGCTG AATTGGAATA CGTCGCCAAG CTAGAAGGAC TATTGGAAGC ATCAAAGACA
TGTCCCACTC TACAAGATAT TCTTGAAGTT GATGTTGGCA ATGATACAGT GAAAACCTCT GGAAGCTATT CCCGTAATCT
GCGTAGAGTT CGGCAGGGTC TTGATCTCGT CAGAGCTATA TTCGAACAAC TTTTGTCTAC TGAAGATTCT TCTCTAAAAG
ACGTGGCTTC AACAGCTTAT GGGCAGGTAT GTGCACCATA CCACACATGG GCGGTACGAA CAGCTGTGTA CGCTGGGATG
TATACACTTC CAACGAGAGA ACAACTTTTG ATGAAGCTCA ATGAAACAGA GCAATCAGCC GAGAAGAAGA TGAAAAGGTA
TATTGCTGCC TCACTTCCGA TTATAGAATA CATTGATAGT CTGTACCTTT CTCGAAATAT TACGTTGGAC TGGTGA

>Vigan.08G028500.01
MPEMDEGEVI EQPLTAIAEA FEELSKWMKE NSDGRHIRLD NFCEVASLVS VLFRCLGLAF KFAELEYVAK LEGLLEASKT
CPTLQDILEV DVGNDTVKTS GSYSRNLRRV RQGLDLVRAI FEQLLSTEDS SLKDVASTAY GQVCAPYHTW AVRTAVYAGM
YTLPTREQLL MKLNETEQSA EKKMKRYIAA SLPIIEYIDS LYLSRNITLD W*