GBrowse Details

Vigan.08G029500.01

Basic Information:
Name: Vigan.08G029500.01
Multiple alignment
Variant Information
Position: Chr08:2358978..2362218 (- strand)
Length: 3241
Functional Information:
Description: Similar to 50S ribosomal protein L15, chloroplastic-like. [XP_004497089.1, Cicer arietinum]
GO: Biological Process: translation (GO:0006412)
Cellular Component: intracellular (GO:0005622)
Cellular Component: ribosome (GO:0005840)
Cellular Component: large ribosomal subunit (GO:0015934)
Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro: Ribosomal protein L15, conserved site (IPR001196)
Ribosomal protein L15, bacterial-type (IPR005749)
Ribosomal protein L18e/L15P (IPR021131)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:21.18,21.29,52.44,164.93,16.94,46.47,12.73,45.56
Arabidopsis thaliana homolog: AT3G25920.1
Automatic updates:
Name: NM_001248130 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max 50S ribosomal protein L15, chloroplastic (LOC100306183), mRNA; nuclear gene for chloroplast product.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr08:2358978..2359250 (- strand)
Length: 273
Type: three_prime_UTR
Position: Chr08:2359251..2359469 (- strand)
Length: 219
Type: CDS
Position: Chr08:2360636..2360787 (- strand)
Length: 152
Type: CDS
Position: Chr08:2361688..2362015 (- strand)
Length: 328
Type: CDS
Position: Chr08:2362090..2362149 (- strand)
Length: 60
Type: CDS
Position: Chr08:2362150..2362218 (- strand)
Length: 69
Type: five_prime_UTR


>Vigan.08G029500.01
ATCCTATCCG TTATTTGAAG TTTGATAGTG CAGTTATCGT GTCATCTCTG GGAGTCCATC ATCACAGAAA TGGCCACTGC
TTTTCTCATT CCACTCTCAT GGTCACCGCA GCTGTCTACT CCTTTCAAGG GAACAGTGAA AACCTTAGTT GCAAAACCAT
GTGTGAAGAT TCAGCGAGCA AGACCCATCG TTTTCGCAGG TTACAAGTCT ACCTCTGCCC CGGTGGCAAC GCCCCTGGTC
GGCGTTCGGT TTCGGCTGGA CAATTTGGGG CCCCAACCGG GTTCCAGGAA GAGGGCAAAG AGAAAGGGTA GAGGAATATC
TGCAGGGCAA GGAGCAAGTT GTGGTTTTGG GATGAGGGGT CAGAAATCTC GATCTGGGCC TGGAGTTAGG AAGGGTTTCG
AAGGTGGTCA GATGCCCCTT TATCGACGAA TCCCCAAACT CAGAGGAATC GCAGGAGGTA TGCATGCGGG ATTGCCCAAA
TATGTCCATG TAAATCTGAG AGACATAGAA GATGCTAAAT TTAAGGAAGG GGAAGAGGTG TCTCTCGAGT CACTGAAGGC
TAAAGGTGTG ATTAACCCAT CAGGAAGAGA AAGAAGACTT CCTTTGAAGA TTTTGGGTGA AGGAGAACTG AGCAAGAAAT
TGACGCTAAA AGCCCGTGCC TTTTCCACAG CAGCGAAGGA GAAACTTGAG AGTGCTGGAT GTTCTCTCAC CTTGCTTCCT
GGCCGCAAGA AATGGGTTAA GCCATCAGTT GCTAAAAACC TTGCTCGTGC TGAAGAATAC TTTGCCAAGA AGCGCGCTGC
AGCTGCCACC GAGGCAGCCT CTGCTTGAAC TTGAACTACT TCTGTGTCAT CACATTTTAG AAATCTTCAA GAGAGTTGCA
GATTGATTTC TTTAGGAACT ACCTCACATA TTTGTCGTTC TTCAGAGTTC TCTCGGTTCA TCAATCTGTT GTGTTACCTA
AGGCATTAAT TCATTCTTCT TTCTGCATTT AAATGTTTTC TAGTTCTGGT TCCAAACGAT GTTTATTGTT GTATACCTTG
TAACATTTTG TTCAACCATC ACCAGAAACT GTTTTGGAAA AAAAGAAAGC GTAAGAAAAT G

>Vigan.08G029500.01
ATGGCCACTG CTTTTCTCAT TCCACTCTCA TGGTCACCGC AGCTGTCTAC TCCTTTCAAG GGAACAGTGA AAACCTTAGT
TGCAAAACCA TGTGTGAAGA TTCAGCGAGC AAGACCCATC GTTTTCGCAG GTTACAAGTC TACCTCTGCC CCGGTGGCAA
CGCCCCTGGT CGGCGTTCGG TTTCGGCTGG ACAATTTGGG GCCCCAACCG GGTTCCAGGA AGAGGGCAAA GAGAAAGGGT
AGAGGAATAT CTGCAGGGCA AGGAGCAAGT TGTGGTTTTG GGATGAGGGG TCAGAAATCT CGATCTGGGC CTGGAGTTAG
GAAGGGTTTC GAAGGTGGTC AGATGCCCCT TTATCGACGA ATCCCCAAAC TCAGAGGAAT CGCAGGAGGT ATGCATGCGG
GATTGCCCAA ATATGTCCAT GTAAATCTGA GAGACATAGA AGATGCTAAA TTTAAGGAAG GGGAAGAGGT GTCTCTCGAG
TCACTGAAGG CTAAAGGTGT GATTAACCCA TCAGGAAGAG AAAGAAGACT TCCTTTGAAG ATTTTGGGTG AAGGAGAACT
GAGCAAGAAA TTGACGCTAA AAGCCCGTGC CTTTTCCACA GCAGCGAAGG AGAAACTTGA GAGTGCTGGA TGTTCTCTCA
CCTTGCTTCC TGGCCGCAAG AAATGGGTTA AGCCATCAGT TGCTAAAAAC CTTGCTCGTG CTGAAGAATA CTTTGCCAAG
AAGCGCGCTG CAGCTGCCAC CGAGGCAGCC TCTGCTTGA

>Vigan.08G029500.01
MATAFLIPLS WSPQLSTPFK GTVKTLVAKP CVKIQRARPI VFAGYKSTSA PVATPLVGVR FRLDNLGPQP GSRKRAKRKG
RGISAGQGAS CGFGMRGQKS RSGPGVRKGF EGGQMPLYRR IPKLRGIAGG MHAGLPKYVH VNLRDIEDAK FKEGEEVSLE
SLKAKGVINP SGRERRLPLK ILGEGELSKK LTLKARAFST AAKEKLESAG CSLTLLPGRK KWVKPSVAKN LARAEEYFAK
KRAAAATEAA SA*