GBrowse Details

Vigan.08G029800.01

Basic Information:
Name: Vigan.08G029800.01
Multiple alignment
Variant Information
Position: Chr08:2398376..2403137 (- strand)
Length: 4762
Functional Information:
Description: Similar to Uncharacterized protein. [I1NFJ5, Glycine max]
InterPro: Domain of unknown function DUF292, eukaryotic (IPR005061)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:27.64,19.53,24.46,27.99,24.20,18.26,13.71,17.97
Arabidopsis thaliana homolog: AT1G25420.1
Automatic updates:
Name: NM_001367235 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max IST1 homolog (LOC100820205), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2398376..2398913 (- strand)
Length: 538
Type: three_prime_UTR
Position: Chr08:2398914..2399288 (- strand)
Length: 375
Type: CDS
Position: Chr08:2400245..2400385 (- strand)
Length: 141
Type: CDS
Position: Chr08:2400490..2400661 (- strand)
Length: 172
Type: CDS
Position: Chr08:2402192..2402295 (- strand)
Length: 104
Type: CDS
Position: Chr08:2402394..2402526 (- strand)
Length: 133
Type: CDS
Position: Chr08:2403014..2403063 (- strand)
Length: 50
Type: CDS
Position: Chr08:2403064..2403137 (- strand)
Length: 74
Type: five_prime_UTR


>Vigan.08G029800.01
TGAAGGGCAG AGACATTTGT TGTTTCCATT GGTCTCACCC TACCACGGGC AGTGGTATCT AAGAAACAGG CACCATGTCA
CTTCTTAACC AGCTTTTTAA CAGAGGCGTT TTGGGAACTC GATGCAAAAC ATGCCTGAAC CTCGCAATTT CACGCATTAA
GCTGCTACAG AACAAAAGAG ATGTGCAACT GAAACAAATG TGCAAGGAGA TAAGCCAATT CTTGCAGGCT GGCCAAGAGG
CAATTGCTAG AATCCGGGTG GAGCATATTA TACGAGAACA AAATATATGG GCTGCATATG AAATCTTGGA GTTGTTCTGT
GAATTTGTTC TTGCGCGTGT ACCTATAATT GAGAACCAGA GGGAATGCCC CTCGGAATTG CGAGAAGCCA TTGCAAGTAT
AATTTTTGCT GCTCCTAGAT GTTCTGATGT ACCAGACTTA TTGCACATCA AGAACTTGTT TACCACTAAA TATGGGAAAG
AATTTGTCTC TGCAGCATCA GAACTTCGTC CTGATTCAGG CGTAAACCGC ACGATCATTG AAAAGCTTTC AGTTACTGCT
CCATCTGGAG AGGTAAAACT CAAGGTCTTG AGGGAGATTG CTGAAGAATA CAATATAGCA TGGGATTCTT CTAAAACTGA
GGCTGAATTT CGGAAAAATC ATGAAGATCT TCTGGGAGGA GCAAAGCAAG TTAGTGCTGG AGTTACGCTT TCTCATACGC
CCAGCAGAAA TGGTTCTAAT AATCCACCAT CTCGTACTAA GGAACCTTCT AACAAGTCTG TGCATGATAA ACAAGAATAT
AAACAACTTG AAGCTCCCAG CCTTTCTAAC AATAATTCTG CATTGAATAT TAATGAAATT GAACAGTCCC ACAAAAATAA
TGATGTTCCC GCTGGAGATG CCCAAAGTGA GACAAGATTT CAATCTTCTG ATGTACTGGA GAAGGCGCGT GCTGCCATTG
CTTCTGCAGA TCGTGCATCA GCAGCTGCTC GTGCTGCTGC TGCACTAGTC CAGAGTAGTT TTGCATCATT GAAGCTGGAA
GGTAAATAAA TCTTCAGTGA TCGTAATAAC GGAAAAGAAA CGTTAGGAAC TAAATGCGAA AGGAGAAAGT GATGTTCTTT
ATTGCGGAGG TGACAGCTTC ATACGCTTGT TTCAAGTAAT AAGAATTGTG CGGTATGCAT TGTATATTCT TAATTTCGTA
TATGTGTATC ATTGTAACTT AACGAAATAC TGAAGGGTGC GAACTTTTCT AAATCTGCCC TTATTCTTGC TACAGCGAAT
AATTGTGTTC ATTTTCAAAA TTGTTATACA TACTTATCAT CTCAGACATG TTTTATTGCA GGGATGGGAT AAACTTTTTG
TAGTTGTGAT ACTTGTTAGG TGTTGTGGCC TTTTCAACCC AACCCAACAT GTGCAAGTGT GATGAGACCT TCACGTGCGA
TTATATTTGA CAGGATTGAT TTTTTTATAA CCGCTGGTTA TCTGGTTATC ATAAGTTATT ATTTGAAGAT GTGTGGGCTA
AAATGAGTAG TCCGGGTTAT ATTCCAGTCT TTGTGTAATT TTTAATTCCA GCTGGTCTTA TGGTGGG

>Vigan.08G029800.01
ATGTCACTTC TTAACCAGCT TTTTAACAGA GGCGTTTTGG GAACTCGATG CAAAACATGC CTGAACCTCG CAATTTCACG
CATTAAGCTG CTACAGAACA AAAGAGATGT GCAACTGAAA CAAATGTGCA AGGAGATAAG CCAATTCTTG CAGGCTGGCC
AAGAGGCAAT TGCTAGAATC CGGGTGGAGC ATATTATACG AGAACAAAAT ATATGGGCTG CATATGAAAT CTTGGAGTTG
TTCTGTGAAT TTGTTCTTGC GCGTGTACCT ATAATTGAGA ACCAGAGGGA ATGCCCCTCG GAATTGCGAG AAGCCATTGC
AAGTATAATT TTTGCTGCTC CTAGATGTTC TGATGTACCA GACTTATTGC ACATCAAGAA CTTGTTTACC ACTAAATATG
GGAAAGAATT TGTCTCTGCA GCATCAGAAC TTCGTCCTGA TTCAGGCGTA AACCGCACGA TCATTGAAAA GCTTTCAGTT
ACTGCTCCAT CTGGAGAGGT AAAACTCAAG GTCTTGAGGG AGATTGCTGA AGAATACAAT ATAGCATGGG ATTCTTCTAA
AACTGAGGCT GAATTTCGGA AAAATCATGA AGATCTTCTG GGAGGAGCAA AGCAAGTTAG TGCTGGAGTT ACGCTTTCTC
ATACGCCCAG CAGAAATGGT TCTAATAATC CACCATCTCG TACTAAGGAA CCTTCTAACA AGTCTGTGCA TGATAAACAA
GAATATAAAC AACTTGAAGC TCCCAGCCTT TCTAACAATA ATTCTGCATT GAATATTAAT GAAATTGAAC AGTCCCACAA
AAATAATGAT GTTCCCGCTG GAGATGCCCA AAGTGAGACA AGATTTCAAT CTTCTGATGT ACTGGAGAAG GCGCGTGCTG
CCATTGCTTC TGCAGATCGT GCATCAGCAG CTGCTCGTGC TGCTGCTGCA CTAGTCCAGA GTAGTTTTGC ATCATTGAAG
CTGGAAGGTA AATAA

>Vigan.08G029800.01
MSLLNQLFNR GVLGTRCKTC LNLAISRIKL LQNKRDVQLK QMCKEISQFL QAGQEAIARI RVEHIIREQN IWAAYEILEL
FCEFVLARVP IIENQRECPS ELREAIASII FAAPRCSDVP DLLHIKNLFT TKYGKEFVSA ASELRPDSGV NRTIIEKLSV
TAPSGEVKLK VLREIAEEYN IAWDSSKTEA EFRKNHEDLL GGAKQVSAGV TLSHTPSRNG SNNPPSRTKE PSNKSVHDKQ
EYKQLEAPSL SNNNSALNIN EIEQSHKNND VPAGDAQSET RFQSSDVLEK ARAAIASADR ASAAARAAAA LVQSSFASLK
LEGK*