GBrowse Details

Vigan.08G030700.01

Basic Information:
Name: Vigan.08G030700.01
Multiple alignment
Variant Information
Position: Chr08:2492727..2494331 (+ strand)
Length: 1605
Functional Information:
Description: Similar to Uncharacterized protein. [I1LEV6, Glycine max]
GO: Biological Process: metabolic process (GO:0008152)
Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
Molecular Function: catalytic activity (GO:0003824)
InterPro: SANT/Myb domain (IPR001005)
Phosphoglycerate/bisphosphoglycerate mutase, active site (IPR001345)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.02,19.92,0.22,0.66,1.03,2.19,0.34
Arabidopsis thaliana homolog: AT1G68320.1
Automatic updates:
Name: KT921217 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max R2R3-type MYB transcription factor MYB108 mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2492727..2492895 (+ strand)
Length: 169
Type: five_prime_UTR
Position: Chr08:2492896..2493046 (+ strand)
Length: 151
Type: CDS
Position: Chr08:2493149..2493278 (+ strand)
Length: 130
Type: CDS
Position: Chr08:2493391..2494027 (+ strand)
Length: 637
Type: CDS
Position: Chr08:2494028..2494331 (+ strand)
Length: 304
Type: three_prime_UTR


>Vigan.08G030700.01
CAGAAACTCA TTTCTAATTT GCTTGCCTCT ACTGGTGTTA GCTTAAACTT TTTTCTCAGC AGTATCATAC TCAAACCGTC
CATAACTTTC TTTGCTCTTG CAAACACCAA CTATAACTTG TGTGGCAATT CTTTTGCTGT GTTGAAAACC ACAAAAACAC
AAACTAACCA TGTCCACAAT TGCAAAGAGA GATTTGAGTT CTAATGAGGA AGACAGTGAG CTGAGAAGAG GACCTTGGAC
TCTTGAAGAA GACAGCCTGC TCATTCACTA TATTGCTCGT CATGGTGAAG GTCGGTGGAA TATGTTAGCC AAGAGTGCAG
GGCTGAAGAG GACTGGAAAA AGCTGCAGAC TCAGATGGCT GAATTATTTA AAACCAGACA TTAAGAGAGG GAACCTCACT
CCACAGGAGC AACTCTTGAT CCTTGAACTC CATTCCAAGT GGGGTAACAG GTGGTCAAAA ATTGCTCAGC ATCTGCCGGG
GAGAACAGAC AATGAGATCA AGAATTATTG GAGAACAAGG GTACAGAAGC AGGCACGCCA ACTTAACATT GAGTCTGGAA
GCAAGAGATT CATTGATGCC GTGAAGTGTT TTTGGATGCC GAGGTTGCTC CAAAAGATGG AACAGAACAA TTCTCCGAGT
CCTCACTGTT CCATGACAAG CATGGTGAAT TTAGGGAATT CTGGAGAAGC TTCTATGAGT TCAACGTCAA GCAGCTTCAA
TATACCCTCT GTGTTTTCAT CATCTCCTCC ACAAAGGGAA TTCATTATGG ACGGTGCAAA TCATCTTGGT ACTATGTCCA
ACCCCATCAA TCCATCCCCA GATTCCTTCC CATTTTCACA GCTGCTTGGA ATTTCTGAAC ACCCCAAAAG TCCTCCCAAT
GTGCTTGAGA ACAATGTCTA CAGCTATCCA ATCCAGGACA ACTGCTATGC CGATACCAAT AACTATGGCA TGGAAGGCCT
AAACATGGAT CCCCTTTCAG CCATGGGAAC TTACGACTTC CCACAGTTTG ATTTTCAGAG CGCAGGGAAT GGATGGATGT
TAGACAGTGT GGAGGATACT ACTTTATGGA ACATGGATGC TATGTGACAG TGTTGTCAAG AGAAGGCATG CATCTCAAGT
TCTTTTATTG TGGGATGGTA TATCATTGAA AACAAATTTG AAGATTCTTA TGCTATACTG ATTCATAGGG AGTATACATA
ATAGTCTCAT TGTTAGAGAT TAGTAGTACC AAGTGTAACG TCATTTTAAT ATGAACCTTT TAAAATAGCA TATATTTAAA
TAGAAAAATG CAGGAGATGA TATTAATGTT CCCCTGTTTC AGATTTATTT AGAAGCTGCA AAAAAAGTTG TAATTTGACA
AAGGCAATGT ATCTTGGATG TTATGAGTGT G

>Vigan.08G030700.01
ATGTCCACAA TTGCAAAGAG AGATTTGAGT TCTAATGAGG AAGACAGTGA GCTGAGAAGA GGACCTTGGA CTCTTGAAGA
AGACAGCCTG CTCATTCACT ATATTGCTCG TCATGGTGAA GGTCGGTGGA ATATGTTAGC CAAGAGTGCA GGGCTGAAGA
GGACTGGAAA AAGCTGCAGA CTCAGATGGC TGAATTATTT AAAACCAGAC ATTAAGAGAG GGAACCTCAC TCCACAGGAG
CAACTCTTGA TCCTTGAACT CCATTCCAAG TGGGGTAACA GGTGGTCAAA AATTGCTCAG CATCTGCCGG GGAGAACAGA
CAATGAGATC AAGAATTATT GGAGAACAAG GGTACAGAAG CAGGCACGCC AACTTAACAT TGAGTCTGGA AGCAAGAGAT
TCATTGATGC CGTGAAGTGT TTTTGGATGC CGAGGTTGCT CCAAAAGATG GAACAGAACA ATTCTCCGAG TCCTCACTGT
TCCATGACAA GCATGGTGAA TTTAGGGAAT TCTGGAGAAG CTTCTATGAG TTCAACGTCA AGCAGCTTCA ATATACCCTC
TGTGTTTTCA TCATCTCCTC CACAAAGGGA ATTCATTATG GACGGTGCAA ATCATCTTGG TACTATGTCC AACCCCATCA
ATCCATCCCC AGATTCCTTC CCATTTTCAC AGCTGCTTGG AATTTCTGAA CACCCCAAAA GTCCTCCCAA TGTGCTTGAG
AACAATGTCT ACAGCTATCC AATCCAGGAC AACTGCTATG CCGATACCAA TAACTATGGC ATGGAAGGCC TAAACATGGA
TCCCCTTTCA GCCATGGGAA CTTACGACTT CCCACAGTTT GATTTTCAGA GCGCAGGGAA TGGATGGATG TTAGACAGTG
TGGAGGATAC TACTTTATGG AACATGGATG CTATGTGA

>Vigan.08G030700.01
MSTIAKRDLS SNEEDSELRR GPWTLEEDSL LIHYIARHGE GRWNMLAKSA GLKRTGKSCR LRWLNYLKPD IKRGNLTPQE
QLLILELHSK WGNRWSKIAQ HLPGRTDNEI KNYWRTRVQK QARQLNIESG SKRFIDAVKC FWMPRLLQKM EQNNSPSPHC
SMTSMVNLGN SGEASMSSTS SSFNIPSVFS SSPPQREFIM DGANHLGTMS NPINPSPDSF PFSQLLGISE HPKSPPNVLE
NNVYSYPIQD NCYADTNNYG MEGLNMDPLS AMGTYDFPQF DFQSAGNGWM LDSVEDTTLW NMDAM*