GBrowse Details

Vigan.08G032100.01

Basic Information:
Name: Vigan.08G032100.01
Multiple alignment
Variant Information
Position: Chr08:2644384..2647556 (+ strand)
Length: 3173
Functional Information:
Description: Similar to Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein isoform 1. [XP_007044265.1, Theobroma cacao]
GO: Cellular Component: membrane (GO:0016020)
Molecular Function: acetylglucosaminyltransferase activity (GO:0008375)
InterPro: Glycosyl transferase, family 14 (IPR003406)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.05,0.05,0.97,1.44,1.45,0.07,1.56,1.27
Automatic updates:
Name: NM_001317689 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max core-2/I-branching enzyme domain-containing protein (LOC100810724), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2644384..2645141 (+ strand)
Length: 758
Type: five_prime_UTR
Position: Chr08:2645142..2645759 (+ strand)
Length: 618
Type: CDS
Position: Chr08:2646714..2647349 (+ strand)
Length: 636
Type: CDS
Position: Chr08:2647350..2647556 (+ strand)
Length: 207
Type: three_prime_UTR


>Vigan.08G032100.01
TACGTTTTGA GAGAAAGAAA ACGTCTTTGT CGTTTCACCA TTGCACACTG TACCACCAAC AGGCGGCACC AGTTAACGAC
AACAGAATCT GCATTTTCCT TGTAAACTTC AACGCGTTAT TTAATGATTT CCTACTTCCA ATCACCCACA TGTAATATAT
TTATTGGTTT CTTGTAACGA ATTTGTATAT AATTAATCTT CGACGGGTTT CCTAGACCAG CCATAACTGT TTCTGGATTT
TTCAACTTCA GTTTTTATTC AAAGCTGTAA CTATTCTAGG AGAGCGTAAA AACTAAAGGA ATATACTCAT CGTAAGTGGC
CATCGAGGAA CACATAGGAG AAAAAGTCAT CTATCCCTAG CCATCGACTC CTGTTTTGAA AGCTCTGTTC GTGCCATAAA
TTGAGCAAAG GGATAGCCTT TCCTCTGCCT TTCTTGATCT TTCTCCACTT CCAGACCTTT CTTTCTCTCT CACCTCTTTT
TATTTTCTTT CTTTAATCTT CCATCCTAGT TTAAGTCTCA AACTAGGTGA ACTTTGTTAT ATATAAAACA CTTTCATTTG
ATCTTCTTGG TATTGGTCTT GTGACTCTCG AGGTATTTTA ATCAGAAGCT TAGTTCGTTG CTTATACAGT TGAGTTGAGT
GTTTCATCAA GTAACGTATT TCTGATCGCT TCTTCTTTAC AAGATTTTAA CTTTGGTACC CATCGTATAT ACCCATATAC
AGAGTCATCA CGGAATTTGG TGTTTTGTCC CCCAGAGAAT GAAGGGCCAA AATAATCAAT ACCCCTTAAA CTCTGTTTCC
AAGTTTTTCA ATGCTCAATT TCACTTTGTT CGGTTCATCG CCTATATCGT TATTCTGGGC TTTGGTATAA CCATTGGGGT
TATCTTCAGT TTCTATCTTA GGAACTGCAA CTTTAGTCTA CAATTCACGC AGTTGTCACT CTCTTCCTTT CCGAGAACAC
AAATCCTGCC AACACCAACA GCAAAACCAG AAATATCTAA TCAAACTCAA ATTCAGACAC AGATTCAAAC TCAAACAGAA
ATCCTCACAG TAACTCAAAC TGAAATTCAA ACTGAGAGTG GTCATGTAGG ATTGAAGGAT TTCCTTCAGC CTCCCGAAGT
TGTGCATGAC ATGGACGATG AGGAATTGCT TTGGAGAGCT TCAATGACTG CAAAGATCCC TGATTACCCG TTTGACCGAG
TTCCGAAGGT TGCCTTCATG TTCTTGACAA GGGGTCCTCT GTTTTTGGCA CCTTTGTGGG AGAAATTCTT CGAAGGGAAT
GAAGGGTTGT ATTCAATTTA CGTGCACTCC AATCCGTCCT ACAATGGATC ACGCCCGGAG AGTCCTGTAT TTGAAGGTCG
AAGAATTCCC AGTAAGGAAG TGGAATGGGG CAATGTGAAC ATGATTGAAG CCGAACGTCG CTTGCTGGCC AATGCACTCC
TTGATATCTC AAACCAACGC TTTGTACTGC TGTCAGAGTC GTGCATACCA CTCTTCAACT TCTCAACCAT CTACACTTAC
TTGATGAACT CTACCCAAAA CTATGTCATG GCATTTGATG ATCCAAGTTC GGTTGGCCGA GGCCGGTACA GTATCCAGAT
GTTGCCCGAT ATCTCCCTCG ACCAATGGAG AAAAGGGTCC CAATGGTTTG AAATGGACAG AGAGCTTGCA CTAGAAGTAG
TATCTGACAA AAAATATTTC CCAGTTTTTC AAGAGTACTG CAAAGGTTCA TGTTACGCAG ACGAACATTA CTTGCCAACG
TATGTGAGCA TCAAGTTTTG GGAGGGGAAT TCAAACAGGA GTTTAACTTG GGTTGATTGG TCAAAGGGTG GTCCACACCC
TGCTAAGTTT CTGAGGTCGG AGATTACTGT CAAGTTCCTA GAGAGTTTAA GGAATCAGAA ATGCAATTAT AACGGAGATA
GCATCAATGT CTGTTTTCTG TTTGCTAGGA AATTTGCACC TAGTACTGTG TCCAAGCTCA CGAAGATTGC ACCCATGGTA
ATGCATTTCT AATACTACCA TAGGTACAAA AACAGAGATT ACCTTATGAC AATTCATTCA TTCTTTTTAT CTTGTAATTT
TGTAACTTTC CGGTATAGAC TTGTTTAATC AAATACGGTG AGTTCTCCAT TGGTTCCATA CATCTGTTAG ACTAATGAGA
ACTGGATGTT TCAAAAACGG TGACAGTCGA GGAAATACAA AACCAATTGA AAGATTTAA

>Vigan.08G032100.01
ATGAAGGGCC AAAATAATCA ATACCCCTTA AACTCTGTTT CCAAGTTTTT CAATGCTCAA TTTCACTTTG TTCGGTTCAT
CGCCTATATC GTTATTCTGG GCTTTGGTAT AACCATTGGG GTTATCTTCA GTTTCTATCT TAGGAACTGC AACTTTAGTC
TACAATTCAC GCAGTTGTCA CTCTCTTCCT TTCCGAGAAC ACAAATCCTG CCAACACCAA CAGCAAAACC AGAAATATCT
AATCAAACTC AAATTCAGAC ACAGATTCAA ACTCAAACAG AAATCCTCAC AGTAACTCAA ACTGAAATTC AAACTGAGAG
TGGTCATGTA GGATTGAAGG ATTTCCTTCA GCCTCCCGAA GTTGTGCATG ACATGGACGA TGAGGAATTG CTTTGGAGAG
CTTCAATGAC TGCAAAGATC CCTGATTACC CGTTTGACCG AGTTCCGAAG GTTGCCTTCA TGTTCTTGAC AAGGGGTCCT
CTGTTTTTGG CACCTTTGTG GGAGAAATTC TTCGAAGGGA ATGAAGGGTT GTATTCAATT TACGTGCACT CCAATCCGTC
CTACAATGGA TCACGCCCGG AGAGTCCTGT ATTTGAAGGT CGAAGAATTC CCAGTAAGGA AGTGGAATGG GGCAATGTGA
ACATGATTGA AGCCGAACGT CGCTTGCTGG CCAATGCACT CCTTGATATC TCAAACCAAC GCTTTGTACT GCTGTCAGAG
TCGTGCATAC CACTCTTCAA CTTCTCAACC ATCTACACTT ACTTGATGAA CTCTACCCAA AACTATGTCA TGGCATTTGA
TGATCCAAGT TCGGTTGGCC GAGGCCGGTA CAGTATCCAG ATGTTGCCCG ATATCTCCCT CGACCAATGG AGAAAAGGGT
CCCAATGGTT TGAAATGGAC AGAGAGCTTG CACTAGAAGT AGTATCTGAC AAAAAATATT TCCCAGTTTT TCAAGAGTAC
TGCAAAGGTT CATGTTACGC AGACGAACAT TACTTGCCAA CGTATGTGAG CATCAAGTTT TGGGAGGGGA ATTCAAACAG
GAGTTTAACT TGGGTTGATT GGTCAAAGGG TGGTCCACAC CCTGCTAAGT TTCTGAGGTC GGAGATTACT GTCAAGTTCC
TAGAGAGTTT AAGGAATCAG AAATGCAATT ATAACGGAGA TAGCATCAAT GTCTGTTTTC TGTTTGCTAG GAAATTTGCA
CCTAGTACTG TGTCCAAGCT CACGAAGATT GCACCCATGG TAATGCATTT CTAA

>Vigan.08G032100.01
MKGQNNQYPL NSVSKFFNAQ FHFVRFIAYI VILGFGITIG VIFSFYLRNC NFSLQFTQLS LSSFPRTQIL PTPTAKPEIS
NQTQIQTQIQ TQTEILTVTQ TEIQTESGHV GLKDFLQPPE VVHDMDDEEL LWRASMTAKI PDYPFDRVPK VAFMFLTRGP
LFLAPLWEKF FEGNEGLYSI YVHSNPSYNG SRPESPVFEG RRIPSKEVEW GNVNMIEAER RLLANALLDI SNQRFVLLSE
SCIPLFNFST IYTYLMNSTQ NYVMAFDDPS SVGRGRYSIQ MLPDISLDQW RKGSQWFEMD RELALEVVSD KKYFPVFQEY
CKGSCYADEH YLPTYVSIKF WEGNSNRSLT WVDWSKGGPH PAKFLRSEIT VKFLESLRNQ KCNYNGDSIN VCFLFARKFA
PSTVSKLTKI APMVMHF*