GBrowse Details

Vigan.08G034200.01

Basic Information:
Name: Vigan.08G034200.01
Multiple alignment
Variant Information
Position: Chr08:2781578..2783526 (+ strand)
Length: 1949
Functional Information:
Description: Similar to Reticulon-like protein. [V7BAP3, Phaseolus vulgaris]
InterPro: Reticulon (IPR003388)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.02,1.63,7.35,1.67,0.73,2.35,2.72,5.50
Automatic updates:
Name: NM_001251363 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306402 (LOC100306402), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:2781578..2781916 (+ strand)
Length: 339
Type: five_prime_UTR
Position: Chr08:2781917..2782004 (+ strand)
Length: 88
Type: CDS
Position: Chr08:2782541..2782721 (+ strand)
Length: 181
Type: CDS
Position: Chr08:2782828..2782957 (+ strand)
Length: 130
Type: CDS
Position: Chr08:2783038..2783107 (+ strand)
Length: 70
Type: CDS
Position: Chr08:2783217..2783386 (+ strand)
Length: 170
Type: CDS
Position: Chr08:2783387..2783526 (+ strand)
Length: 140
Type: three_prime_UTR


>Vigan.08G034200.01
CCGTCCCTCT CATGTGTAGT TGTATAATAT TCCCACGAAA AGTAGTAAGA AAAAACAACA ACATAGGATT AGACACGGTC
GAGGGTAAAC GTGACAGACA CTAACAATGT ATCCTAAGTC ATGTGTGGGC ACGAGAAAAT GAAACTTGAA AAGCATGCCA
AAGCCATACC TTTCCTCTCA GGAACGAGTT CATCAAATTT CTTGGTTACA AAGGTTAGAA CCACAATACA TCACATATAA
GTTGCTACCA CGAAACATGA ATCACAATAG TGCTACAAAC TTACCTCACC AGAATCAACA AACACAACCA ATACATTTTC
AATCATTCTA TTCTTAACTA TGCCAATCCG TTCTCGTGAG CCTGCACAAA GGCCAGGTTT CTTCCACCGA CAGAGACCAC
TCCATGCACT TCTTGGCGGA GGAAAGCTTG CTGATATATT GCTATGGAAA GACAAGATAT CATCGGCAAC AATGGTAGCT
GGATTCTCCA TGATTTGGTT CCTCTTTGAA GTGGTCGAAT ACAATTTTCT CACTCTTCTT TGTCACATCC TCATCGCCGT
CATGCTCGTC CTATTCGTAT GGTATAATGC AGCAGGACTC ATCACATGGA GCCTGCCTCA AATCTATGAT TTTCAAATCC
CCGAACCCAC CTTTAGATTC TTGTTCCAAA AGCTGAACTC ATTCTTGAGG AATTTTTACG ACATTTCAAC TGGGAAAGAC
CTAACACTCT TCTTTGTGAC AATTACCGGT CTCTGGGTCA TGTCAGCTAT TGGGAATTAT TTTACAACTT TGAATCTCCT
ATATATACTG TTCCTCTGCC TGGTGACCCT TCCCATTATG TATGAGCGAT ATGAACAAGA GGTGAATTAT CTAGCAAGCA
AAGGAAATCA AGACGTGAAG AGATTGTTCA ATACATTGGA TAATAAAGTT CTGAACAAGA TTCCAAGGGG ACCTGTGAAA
GAAAAGAAGA ACAAATGAGT TTTAGATATG GGAAAGTGTG TAAAAGATAA TAATGATTGC AAAATTATTT ATTCGCAACC
ACAAACTATT GTATAAAAAA ATATATATGA TGGTGGAATA ATTGATATTG TTTAATGCAT TTTAGAACAT TCATAATA

>Vigan.08G034200.01
ATGCCAATCC GTTCTCGTGA GCCTGCACAA AGGCCAGGTT TCTTCCACCG ACAGAGACCA CTCCATGCAC TTCTTGGCGG
AGGAAAGCTT GCTGATATAT TGCTATGGAA AGACAAGATA TCATCGGCAA CAATGGTAGC TGGATTCTCC ATGATTTGGT
TCCTCTTTGA AGTGGTCGAA TACAATTTTC TCACTCTTCT TTGTCACATC CTCATCGCCG TCATGCTCGT CCTATTCGTA
TGGTATAATG CAGCAGGACT CATCACATGG AGCCTGCCTC AAATCTATGA TTTTCAAATC CCCGAACCCA CCTTTAGATT
CTTGTTCCAA AAGCTGAACT CATTCTTGAG GAATTTTTAC GACATTTCAA CTGGGAAAGA CCTAACACTC TTCTTTGTGA
CAATTACCGG TCTCTGGGTC ATGTCAGCTA TTGGGAATTA TTTTACAACT TTGAATCTCC TATATATACT GTTCCTCTGC
CTGGTGACCC TTCCCATTAT GTATGAGCGA TATGAACAAG AGGTGAATTA TCTAGCAAGC AAAGGAAATC AAGACGTGAA
GAGATTGTTC AATACATTGG ATAATAAAGT TCTGAACAAG ATTCCAAGGG GACCTGTGAA AGAAAAGAAG AACAAATGA

>Vigan.08G034200.01
MPIRSREPAQ RPGFFHRQRP LHALLGGGKL ADILLWKDKI SSATMVAGFS MIWFLFEVVE YNFLTLLCHI LIAVMLVLFV
WYNAAGLITW SLPQIYDFQI PEPTFRFLFQ KLNSFLRNFY DISTGKDLTL FFVTITGLWV MSAIGNYFTT LNLLYILFLC
LVTLPIMYER YEQEVNYLAS KGNQDVKRLF NTLDNKVLNK IPRGPVKEKK NK*