GBrowse Details

Vigan.08G037400.01

Basic Information:
Name: Vigan.08G037400.01
Multiple alignment
Variant Information
Position: Chr08:3013422..3016723 (+ strand)
Length: 3302
Functional Information:
Description: Similar to Fructose-bisphosphate aldolase. [I1NFR3, Glycine max]
GO: Biological Process: glycolysis (GO:0006096)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: fructose-bisphosphate aldolase activity (GO:0004332)
InterPro: Fructose-bisphosphate aldolase, class-I (IPR000741)
Aldolase-type TIM barrel (IPR013785)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:261.88,36.07,44.55,18.87,72.23,105.81,80.11,36.89
Arabidopsis thaliana homolog: AT2G01140.1, AT2G21330.1, AT4G38970.1
Automatic updates:
Name: NM_001255243 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative fructose-bisphosphate aldolase 3, chloroplastic (LOC100786504), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3013422..3013614 (+ strand)
Length: 193
Type: five_prime_UTR
Position: Chr08:3013615..3013761 (+ strand)
Length: 147
Type: CDS
Position: Chr08:3014546..3014815 (+ strand)
Length: 270
Type: CDS
Position: Chr08:3014909..3015018 (+ strand)
Length: 110
Type: CDS
Position: Chr08:3015098..3015188 (+ strand)
Length: 91
Type: CDS
Position: Chr08:3015519..3015788 (+ strand)
Length: 270
Type: CDS
Position: Chr08:3015906..3016184 (+ strand)
Length: 279
Type: CDS
Position: Chr08:3016185..3016723 (+ strand)
Length: 539
Type: three_prime_UTR


>Vigan.08G037400.01
GGTTGTTGAT ATTGCCGCTT GAGAAGTGTC TCACATCACC TACCGCGGAG TGACCAAGAA AACCAAAACG AATCAAACCA
AACACTTCAT TTCTTTTTCA CGGTTTTCTC TTTCCCTATA AAACCTTCAG ATCACAACAC AGCACAATCT TCACTGGACT
TTGCAACAAT CCATTTTTTC ACTCTTAACA TCCATGGCTA TGGCTTCTGC AAAGCTCAAT ACTTTGTCTT CACAGTGGAT
CGCCCACAGC ACCTTTTCTC CACGCCGGGG ATCTTCTCCT CGCCGGGTCT CTCTCCCGAT CCGCGCCTCT TCTTACCAAC
ACGAACTCGT CCAAACTGCT AAATCTATTG CAACTCCTGG GCGTGGAATT CTTGCAATTG ATGAATCAAA TGCAACATGC
GGGAAGCGTT TAGCATCCAT TGGTTTGGAC AATACTGAGG TGAATCGCCA GGCTTACAGG CAACTTCTGC TTACCACACC
TGGCCTTGGA GAGTATATTT CTGGTGCCAT TCTTTTTGAA GAAACCCTTT ACCAGTCAAC CACTGATGGA AAGAAATTTG
TGGATTGCCT TCGTGATCAG AACATTGTTC CTGGCATCAA AGTTGATAAG GGTCTGGTCC CCCTGCCGGG TTCAAACAAT
GAATCATGGT GCCAAGGGTT GGATGGATTG GCTTCTAGGT CTGCTGAATA CTACAAGCAA GGTGCTCGAT TTGCCAAGTG
GAGGACAGTT GTTAGCATTC CATGTGGTCC TTCTGCATTA GCTGTTAAGG AAGCAGCATG GGGACTTGCA CGTTATGCCG
CTATCTCTCA GGACAATGGC CTTGTGCCAA TTGTGGAGCC TGAAATTCTT CTGGACGGAG ACCACTCAAT TGAAAGGACG
TTGGAAGTTG CCGAGAAAGT CTGGTCTGAA GTCTTCTTCT ACTTGGCTGA AAACAATGTC ATGTTTGAGG GAATTTTGCT
CAAACCTAGC ATGGTTACAC CTGGGGCTGG ACATAAGGAA AAGGCTTCTC CGGAAACCGT TGCCAAATAT ACTCTAACCT
TGCTTAGAAG AAGAGTTCCT CCAGCAGTAC CCGGAATCAT GTTTTTGTCG GGTGGACAAT CTGAAGTGGA AGCGACACTT
AATCTAAATG CAATGAACCA AAGCCCCAAC CCATGGCATG TTTCTTTCTC GTATGCTCGA GCTCTTCAGA ACACCGTGCT
AAAGACGTGG AAAGGACACC CTGAGAATGT GGAAGCTGCT CAAAAGTCTC TTTTGGTGCG CGCAAAAGCA AACTCCTTGG
CTCAACTTGG AAGATATTCT GCGGAGGGTG AGAGTGAAGA GGCAAAGAAG GGAATGTTTG TCAAGGGCTA TGTCTACTAA
TTTCTTTAGC TTTTTATCAT TCCTTCTTTG CAGTGATCGT GAAGGGACTT AGATGTGTTT TAGTTTTTTT TTTCTACTTC
TAGCATGAGT CTGAATAAAT TGAAGCTAGA AAGAAAGGTT TTCTTGGTAA AATGAATGGG TATTAGTAAA AAACCTAAAA
AACCCAGACG AGGGAAAAAG AACAGTTTAT TACTTGGTTA TTGTTTATTT GGCTGTTCAC AGATTTTGTT CTGGTAGTGT
GCAGTATGTG ATTGGGAATA TCATTCGCAT ATTTAATCCG CATTTGTGTG TGCCATATTT ATGAAGTATT GAAAAAATGA
TATAATCAGA ATAAGCCTTT TATAGTAAGT CTTTCCTGAT GAGCGATATG AAGTTGATAT TCTGCATTTG CCCATGGTAT
TGACTAGTTT TTGTCCTGTG CTAGTGTTTA AGTTTTCTAA CCATAAATCA TTGGCTGGGT ATACGTTATG CATATATACT
TTTGATTAAT TTTAGTAGGA AAACTGCATT TTTTTGTCCA AATAAAATTT TAATTGTAA

>Vigan.08G037400.01
ATGGCTATGG CTTCTGCAAA GCTCAATACT TTGTCTTCAC AGTGGATCGC CCACAGCACC TTTTCTCCAC GCCGGGGATC
TTCTCCTCGC CGGGTCTCTC TCCCGATCCG CGCCTCTTCT TACCAACACG AACTCGTCCA AACTGCTAAA TCTATTGCAA
CTCCTGGGCG TGGAATTCTT GCAATTGATG AATCAAATGC AACATGCGGG AAGCGTTTAG CATCCATTGG TTTGGACAAT
ACTGAGGTGA ATCGCCAGGC TTACAGGCAA CTTCTGCTTA CCACACCTGG CCTTGGAGAG TATATTTCTG GTGCCATTCT
TTTTGAAGAA ACCCTTTACC AGTCAACCAC TGATGGAAAG AAATTTGTGG ATTGCCTTCG TGATCAGAAC ATTGTTCCTG
GCATCAAAGT TGATAAGGGT CTGGTCCCCC TGCCGGGTTC AAACAATGAA TCATGGTGCC AAGGGTTGGA TGGATTGGCT
TCTAGGTCTG CTGAATACTA CAAGCAAGGT GCTCGATTTG CCAAGTGGAG GACAGTTGTT AGCATTCCAT GTGGTCCTTC
TGCATTAGCT GTTAAGGAAG CAGCATGGGG ACTTGCACGT TATGCCGCTA TCTCTCAGGA CAATGGCCTT GTGCCAATTG
TGGAGCCTGA AATTCTTCTG GACGGAGACC ACTCAATTGA AAGGACGTTG GAAGTTGCCG AGAAAGTCTG GTCTGAAGTC
TTCTTCTACT TGGCTGAAAA CAATGTCATG TTTGAGGGAA TTTTGCTCAA ACCTAGCATG GTTACACCTG GGGCTGGACA
TAAGGAAAAG GCTTCTCCGG AAACCGTTGC CAAATATACT CTAACCTTGC TTAGAAGAAG AGTTCCTCCA GCAGTACCCG
GAATCATGTT TTTGTCGGGT GGACAATCTG AAGTGGAAGC GACACTTAAT CTAAATGCAA TGAACCAAAG CCCCAACCCA
TGGCATGTTT CTTTCTCGTA TGCTCGAGCT CTTCAGAACA CCGTGCTAAA GACGTGGAAA GGACACCCTG AGAATGTGGA
AGCTGCTCAA AAGTCTCTTT TGGTGCGCGC AAAAGCAAAC TCCTTGGCTC AACTTGGAAG ATATTCTGCG GAGGGTGAGA
GTGAAGAGGC AAAGAAGGGA ATGTTTGTCA AGGGCTATGT CTACTAA

>Vigan.08G037400.01
MAMASAKLNT LSSQWIAHST FSPRRGSSPR RVSLPIRASS YQHELVQTAK SIATPGRGIL AIDESNATCG KRLASIGLDN
TEVNRQAYRQ LLLTTPGLGE YISGAILFEE TLYQSTTDGK KFVDCLRDQN IVPGIKVDKG LVPLPGSNNE SWCQGLDGLA
SRSAEYYKQG ARFAKWRTVV SIPCGPSALA VKEAAWGLAR YAAISQDNGL VPIVEPEILL DGDHSIERTL EVAEKVWSEV
FFYLAENNVM FEGILLKPSM VTPGAGHKEK ASPETVAKYT LTLLRRRVPP AVPGIMFLSG GQSEVEATLN LNAMNQSPNP
WHVSFSYARA LQNTVLKTWK GHPENVEAAQ KSLLVRAKAN SLAQLGRYSA EGESEEAKKG MFVKGYVY*