GBrowse Details

Vigan.08G040000.01

Basic Information:
Name: Vigan.08G040000.01
Multiple alignment
Variant Information
Position: Chr08:3230855..3237496 (+ strand)
Length: 6642
Functional Information:
Description: Similar to Sulfhydryl oxidase. [V7BDK7, Phaseolus vulgaris]
GO: Biological Process: cell redox homeostasis (GO:0045454)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: thiol oxidase activity (GO:0016972)
InterPro: Thioredoxin-like fold (IPR012336)
Thioredoxin domain (IPR013766)
ERV/ALR sulfhydryl oxidase domain (IPR017905)
Thioredoxin, conserved site (IPR017937)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.83,26.12,14.81,15.44,14.87,7.40,15.99,19.43
Arabidopsis thaliana homolog: AT1G15020.2, AT2G01270.1
Automatic updates:
Name: NM_001251511 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max protein disulfide family pdiq-1a (PDIQ-1A), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3230855..3231217 (+ strand)
Length: 363
Type: five_prime_UTR
Position: Chr08:3231218..3231441 (+ strand)
Length: 224
Type: CDS
Position: Chr08:3232303..3232327 (+ strand)
Length: 25
Type: CDS
Position: Chr08:3232418..3232510 (+ strand)
Length: 93
Type: CDS
Position: Chr08:3232628..3232809 (+ strand)
Length: 182
Type: CDS
Position: Chr08:3233110..3233179 (+ strand)
Length: 70
Type: CDS
Position: Chr08:3233268..3233336 (+ strand)
Length: 69
Type: CDS
Position: Chr08:3233416..3233489 (+ strand)
Length: 74
Type: CDS
Position: Chr08:3233577..3233721 (+ strand)
Length: 145
Type: CDS
Position: Chr08:3234965..3235005 (+ strand)
Length: 41
Type: CDS
Position: Chr08:3236219..3236365 (+ strand)
Length: 147
Type: CDS
Position: Chr08:3236445..3236907 (+ strand)
Length: 463
Type: CDS
Position: Chr08:3236908..3237496 (+ strand)
Length: 589
Type: three_prime_UTR


>Vigan.08G040000.01
ACGTTTGGTA ACAAACTACG TAAGAGAGGC GACAGAGGAA ACAGAGTGAT TCAAGGTTTG GTGTCTGAGA GAAGTGCTTC
CGCCATCTCT GATCCGAAGC AAAGAAAAAC TTATGGAAAC GTAATTCTCA CCCTTTTCTG GTTCATCTTT CCCTTCCCAA
CAACACCCAT CAAATTCAAT CTAACATACA CAACCACTCA AGCTAAACCC TTCTCTCTCA CACAATAAAC AGTAACAAGA
AAGAAAACTG TTCCAGTAAT AACAGATCCA TTTCTCTCTC CACCCCACCT TCTAAAAGCT CGCCTTTTCT TCAATTCTCT
CAAAACCCTA ATCCTCTTAG CCCTCTGATC CACACCGTTT TCCATGTCTG GGAAGTATTT ACATTTGGGT CTGTCTCTGT
GCATACTTTT TGTGTGCTGT TCAGCGACTT CGTCTTCTTC CTTCGCGTCG CGCCGTTCAA TCCTTCGAGA GGTCAAGAAC
GCTGTTAATC ATCCCGATTA TGCCGTTGAA CTGAACGGCA CGAATTTCGA TGCCGTTCTC AAGGAAACCC CTGCTACTTT
TGCCGTTGTA GAATTCTTTG CCCATTGGTG CCCTGCATGT AGGAATTATA AGCCACACTA CGAAAAGGTC GCCAGATTAT
TTAATGGACC TGACGCAGTG CATCCAGGAA TCATATTAAT GACAAGGGTA GATTGTGCAT CAAAGATAAA TACTAAACTA
TGCGATAAGT TTTCTGTTAG TCATTATCCT ATGCTTTTTT GGAGCCATCC TTCTAAATTT GTTGGCGGTG GTTGGGATCC
TAAACAAGAT AAAAATGATA TACGTGTTAT TGATGATGCA CGCACTGCTG ATCGGTTACT TAGTTGGATC AACAAGCAAT
TAGGCAGTTC GTTTGGCCTG GATGATCAGA AATTTCAAAA TGAGCTTCTT TCATCCAATG CCTCAGATCC TGGACAGATT
GCCAGAGCTA TCTATGATGT AGAAGAGGCA ACTTCTACAG CTTTTGACAT CATCTTAGAG CACAAGATGA TAAAACCAGA
AACTCGTGCT TCACTCATTA AGTTCCTTCA GCTTTTGGCA GCTCATCATC CTTCTAGGAG ATGCCGGAAG GGTACTGCTG
AATTTCTTGT GAGCTTCGAT GACTTGTACC CAACAGATTT TTGGTCAACT AAGCAGCAGG AAGATGATAA TAGTTCAATT
AGGAACCTCA AGATTTGTGG GAAAGATGTG CCTCGCGGAT ACTGGATGTT CTGTCGTGGC AGTAAGAATG AAACCAGAGG
ATTCAGCTGT GGTTTATGGG TTCTTCTGCA TTCACTCTCT GTGAGGATAG AGGATGAAGA GAGTCAGTTT ACATTCAACG
CAATATGTGA TTTTGTTCAC AACTTCTTCA TCTGTGAGGA ATGCCGACAA CATTTTTACA AGATGTGTTC AAGTGTTACT
AGTCCTTTCA ACACGGCCCG TGAGTTTGCA CTCTGGTTGT GGAGTTCCCA CAACAAAGTG AACGAAAGAT TGATGAAAGA
AGAAGCATCA CTAGACACCG CTGACCCCAA TTTTCCAAAG ACTATTTGGC CACCAAATCA ACTTTGCGCT TCCTGTTACA
AAGCCTTTGA TCAGAAGAGC AACAAAATTG AATGGAACCA AGACGAGGTC TTTAAGTTTT TGACTGATTA CTACGGTAAA
ACACTAGCGT CTCTGTACAA GAACAGGAAT ATTGACGGAA ATGATGGAGC CGAAGAAGAT TTAATAGTCG CAACTAATGC
AATTGTGGTG CCTGTGGGAG CTGCATTGGC TATTGCTGTT GCTAGCTGTG CCTTTGGAGC ACTTGCTTGC TACTGGCGTT
CGCAGCAAAA GAGTCGGAAG TATTTTCACC ACCTACACTC TTTAAAGAAC ATTTGATAAT TAGGAGGGTA ATGAACTCTT
TCAAAAATTA ACCAATGACT GGGTCCTGAA GAACTAAAAG GGGTGGGTAT ATGGAGAGAG ATAGAGTGAG AGATTATGTT
GGAGTTATTG AGATTCTTAT ATATTACTTC TTTTTGTTTG CATAATGTTT CAGGCCTAGG AGAACGTGGA AGTAGGAATT
GTAGACAAGT AAACTTCAAG GCATGTGAGG TGCGTAGCAG CCTTCATAGG CATCCAATTC ATGGTCTTAC TCCAAAGAGT
CTTGCCAACT TCCTTTTTGA ATGCTTCATC AATAGAATGT ACAGAAAACA ATTCTTGCTC TGGACACCAT TACTGATTTG
TGCTATTTTC TTTCACTTTT TTTTTTTTTT TGGCCTTGAG TCACATCATC TACTATACAC TAAACAACCT TAGGATTTTG
GGGGGAAAGG AGCACGTGAC ATGTAACATT TTTGCTTTGT AATTTGGTGT TATTTTTTCA ATATCAAAGT AACTGTATAA
GCTAAAAGGC CTGACTTACA TAGTACGGTT TCACGTTTAC CAAACATTTG AATGAAATCA AAGTCTAAAA TCATTTAAAG
GTCTT

>Vigan.08G040000.01
ATGTCTGGGA AGTATTTACA TTTGGGTCTG TCTCTGTGCA TACTTTTTGT GTGCTGTTCA GCGACTTCGT CTTCTTCCTT
CGCGTCGCGC CGTTCAATCC TTCGAGAGGT CAAGAACGCT GTTAATCATC CCGATTATGC CGTTGAACTG AACGGCACGA
ATTTCGATGC CGTTCTCAAG GAAACCCCTG CTACTTTTGC CGTTGTAGAA TTCTTTGCCC ATTGGTGCCC TGCATGTAGG
AATTATAAGC CACACTACGA AAAGGTCGCC AGATTATTTA ATGGACCTGA CGCAGTGCAT CCAGGAATCA TATTAATGAC
AAGGGTAGAT TGTGCATCAA AGATAAATAC TAAACTATGC GATAAGTTTT CTGTTAGTCA TTATCCTATG CTTTTTTGGA
GCCATCCTTC TAAATTTGTT GGCGGTGGTT GGGATCCTAA ACAAGATAAA AATGATATAC GTGTTATTGA TGATGCACGC
ACTGCTGATC GGTTACTTAG TTGGATCAAC AAGCAATTAG GCAGTTCGTT TGGCCTGGAT GATCAGAAAT TTCAAAATGA
GCTTCTTTCA TCCAATGCCT CAGATCCTGG ACAGATTGCC AGAGCTATCT ATGATGTAGA AGAGGCAACT TCTACAGCTT
TTGACATCAT CTTAGAGCAC AAGATGATAA AACCAGAAAC TCGTGCTTCA CTCATTAAGT TCCTTCAGCT TTTGGCAGCT
CATCATCCTT CTAGGAGATG CCGGAAGGGT ACTGCTGAAT TTCTTGTGAG CTTCGATGAC TTGTACCCAA CAGATTTTTG
GTCAACTAAG CAGCAGGAAG ATGATAATAG TTCAATTAGG AACCTCAAGA TTTGTGGGAA AGATGTGCCT CGCGGATACT
GGATGTTCTG TCGTGGCAGT AAGAATGAAA CCAGAGGATT CAGCTGTGGT TTATGGGTTC TTCTGCATTC ACTCTCTGTG
AGGATAGAGG ATGAAGAGAG TCAGTTTACA TTCAACGCAA TATGTGATTT TGTTCACAAC TTCTTCATCT GTGAGGAATG
CCGACAACAT TTTTACAAGA TGTGTTCAAG TGTTACTAGT CCTTTCAACA CGGCCCGTGA GTTTGCACTC TGGTTGTGGA
GTTCCCACAA CAAAGTGAAC GAAAGATTGA TGAAAGAAGA AGCATCACTA GACACCGCTG ACCCCAATTT TCCAAAGACT
ATTTGGCCAC CAAATCAACT TTGCGCTTCC TGTTACAAAG CCTTTGATCA GAAGAGCAAC AAAATTGAAT GGAACCAAGA
CGAGGTCTTT AAGTTTTTGA CTGATTACTA CGGTAAAACA CTAGCGTCTC TGTACAAGAA CAGGAATATT GACGGAAATG
ATGGAGCCGA AGAAGATTTA ATAGTCGCAA CTAATGCAAT TGTGGTGCCT GTGGGAGCTG CATTGGCTAT TGCTGTTGCT
AGCTGTGCCT TTGGAGCACT TGCTTGCTAC TGGCGTTCGC AGCAAAAGAG TCGGAAGTAT TTTCACCACC TACACTCTTT
AAAGAACATT TGA

>Vigan.08G040000.01
MSGKYLHLGL SLCILFVCCS ATSSSSFASR RSILREVKNA VNHPDYAVEL NGTNFDAVLK ETPATFAVVE FFAHWCPACR
NYKPHYEKVA RLFNGPDAVH PGIILMTRVD CASKINTKLC DKFSVSHYPM LFWSHPSKFV GGGWDPKQDK NDIRVIDDAR
TADRLLSWIN KQLGSSFGLD DQKFQNELLS SNASDPGQIA RAIYDVEEAT STAFDIILEH KMIKPETRAS LIKFLQLLAA
HHPSRRCRKG TAEFLVSFDD LYPTDFWSTK QQEDDNSSIR NLKICGKDVP RGYWMFCRGS KNETRGFSCG LWVLLHSLSV
RIEDEESQFT FNAICDFVHN FFICEECRQH FYKMCSSVTS PFNTAREFAL WLWSSHNKVN ERLMKEEASL DTADPNFPKT
IWPPNQLCAS CYKAFDQKSN KIEWNQDEVF KFLTDYYGKT LASLYKNRNI DGNDGAEEDL IVATNAIVVP VGAALAIAVA
SCAFGALACY WRSQQKSRKY FHHLHSLKNI *