VIGGS:GBrowse

Vigan.08G042100.01

Basic Information:

Name:	Vigan.08G042100.01 Multiple alignment Variant Information
Position:	Chr08:3362672..3364924 (+ strand)
Length:	2253

Functional Information:

Description:	Similar to mediator of RNA polymerase II transcription subunit 21-like isoform X2. [XP_004515421.1, Cicer arietinum]
InterPro:	Mediator complex, subunit Med21 (IPR021384)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:30.26,15.27,15.86,21.55,12.61,19.78,14.72,13.95
Arabidopsis thaliana homolog:	AT4G04780.1

Automatic updates:

Name:	NM_001248719 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100306480 (LOC100306480), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr08:3362672..3362878 (+ strand)
Length:	207
Type:	CDS

Position:	Chr08:3364268..3364345 (+ strand)
Length:	78
Type:	CDS

Position:	Chr08:3364462..3364513 (+ strand)
Length:	52
Type:	CDS

Position:	Chr08:3364842..3364924 (+ strand)
Length:	83
Type:	CDS

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.08G042100.01
ATGGATATAA TCTCCCAATT ACAAGAACAA GTTAATCTGA TTGCACATTT AGCTTTCAAT ACCATTGGGA CATTGCAAAG
GGATGCCCCT CCTAATCGAC TGTCGCCAAA TTATCCTGAA CCACCAGCAC ATCCTACAGA AGAGGGGACA AATTTTTCAG
AGCAGCCAAA GTTGATGAGT TCTACTTTAG TGAAGGCTGC CAAGCAGTTT GATGCATTAG TTGCGGCTCT TCCGATATCC
GAGTCAGGTG AAGAAGCACA GCTTAAGAGG ATAACAGAAC TACAAGCTGA AAATGATGCA ATAGGCCAAG AACTTCAAAA
GCAGTTGGAA GCTGCAGAGA AGGAATTGAA TCAAGTTCAA GAACTGTTTA GGCAAGCATC AGATAATTGT TTGAACTTGA
AGAAACCAGA TGACAATTAG

[show][hide][copy]CDS

>Vigan.08G042100.01
ATGGATATAA TCTCCCAATT ACAAGAACAA GTTAATCTGA TTGCACATTT AGCTTTCAAT ACCATTGGGA CATTGCAAAG
GGATGCCCCT CCTAATCGAC TGTCGCCAAA TTATCCTGAA CCACCAGCAC ATCCTACAGA AGAGGGGACA AATTTTTCAG
AGCAGCCAAA GTTGATGAGT TCTACTTTAG TGAAGGCTGC CAAGCAGTTT GATGCATTAG TTGCGGCTCT TCCGATATCC
GAGTCAGGTG AAGAAGCACA GCTTAAGAGG ATAACAGAAC TACAAGCTGA AAATGATGCA ATAGGCCAAG AACTTCAAAA
GCAGTTGGAA GCTGCAGAGA AGGAATTGAA TCAAGTTCAA GAACTGTTTA GGCAAGCATC AGATAATTGT TTGAACTTGA
AGAAACCAGA TGACAATTAG

[show][hide][copy]PROTEIN

>Vigan.08G042100.01
MDIISQLQEQ VNLIAHLAFN TIGTLQRDAP PNRLSPNYPE PPAHPTEEGT NFSEQPKLMS STLVKAAKQF DALVAALPIS
ESGEEAQLKR ITELQAENDA IGQELQKQLE AAEKELNQVQ ELFRQASDNC LNLKKPDDN*