GBrowse Details

Vigan.08G043500.01

Basic Information:
Name: Vigan.08G043500.01
Multiple alignment
Variant Information
Position: Chr08:3472566..3475229 (- strand)
Length: 2664
Functional Information:
Description: Similar to Uncharacterized protein. [I1NFW5, Glycine max]
InterPro: Chlorophyll a/b binding protein domain (IPR023329)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:11.34,6.69,25.28,160.11,7.91,33.17,5.47,35.42
Arabidopsis thaliana homolog: AT4G34190.1
Automatic updates:
Name: NM_001248240 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100306702 (LOC100306702), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3472566..3473144 (- strand)
Length: 579
Type: three_prime_UTR
Position: Chr08:3473145..3473249 (- strand)
Length: 105
Type: CDS
Position: Chr08:3473790..3473965 (- strand)
Length: 176
Type: CDS
Position: Chr08:3474922..3475023 (- strand)
Length: 102
Type: CDS
Position: Chr08:3475108..3475153 (- strand)
Length: 46
Type: CDS
Position: Chr08:3475154..3475229 (- strand)
Length: 76
Type: five_prime_UTR


>Vigan.08G043500.01
CTGACACATC TTCAAACAAA AGTAAGAGAT AAAATCCGTA GGCACCGCAC AACTGAGATA GTTGCAATTC ACCACCATGG
CACTTGTTCA ACCCTCTGCT TCTCTTACTC TCTCCGTTCG TGATGCATGT GTTTTCACTG CACCAAAATA CCCTCCCACC
GCTCACTTTC CTCACAGGAA TTTGATTACA ACTCGAGCAT CATTCATCGC TGGTTCCCCA CTCTTGATTC GAAAGAATCA
TGGAAGGAAG CCCACATGCA AAGCAATGCC TGTTTCGATA CGATGTGAGC AAAGCACCCA GCAAGGGAAC AGTTTGGATG
TGTGGCTAGG CCGGCTAGCC ATGGTTGGCT TTGCAGTAGC CATCACTGTT GAAATTGCCA CTGGGAAGGG ACTCCTAGAG
AACTTTGGAC TAGCAACGCC CCTTCCTACA GTTGCCCTCG CAGTAACAGC ACTTGTGGGT GTCTTGACAG CAGTTTTTAT
CTTCCAGTCA GCCTCGAAGA ATTGATCACA TATTTAGACT CGTCGTACTT GTTGTAAATT ATGAAGCTCA GAGGTTTCGT
TTGTTGGAGA TAAAATTTCA TCATTCTTTT TCTGTATTAT TTGATGAAAA AATTAATTGG CATTGAAGCA TGAAAAGTCA
CAAATGTCAA AGTATGACAA TCCACTTAGA TGTGTCTATC AGATGAACTT TCTCACCATA CATATAGATC AAAGTATAAA
AATTCTCTTT CTTCAGGTCC ATTTTGCTTG CACAGTTCCA TCGGTAAGAA CATATCCCCG ACTGGCAAAG AGGTTCTTAC
ACGAGTGTGA ATGGAGGATT TAGTAGGTCT TCATTCATCT CAGGGATGAA AACAATTCCG TAGAACCTAA AAGTGGGGAA
AACAAAGCTG TCAAATACGA TATCTGACTT ATAAAAGAGG AGTGGGAAAG ATAGCAGGGT CTCCTTTAGA CTTCCCTGAC
ATTGAATACC AGTGATAATG TGTTCTGTGA TGGATCAGGT TTTAATTTGT TGAGTAAAGA AAATAGAAAA GGAGCATTGA
ATTGATTGGC TATTCAACAA TTTTTCGAAC AAGGAAGCCT GACA

>Vigan.08G043500.01
ATGGCACTTG TTCAACCCTC TGCTTCTCTT ACTCTCTCCG TTCGTGATGC ATGTGTTTTC ACTGCACCAA AATACCCTCC
CACCGCTCAC TTTCCTCACA GGAATTTGAT TACAACTCGA GCATCATTCA TCGCTGGTTC CCCACTCTTG ATTCGAAAGA
ATCATGGAAG GAAGCCCACA TGCAAAGCAA TGCCTGTTTC GATACGATGT GAGCAAAGCA CCCAGCAAGG GAACAGTTTG
GATGTGTGGC TAGGCCGGCT AGCCATGGTT GGCTTTGCAG TAGCCATCAC TGTTGAAATT GCCACTGGGA AGGGACTCCT
AGAGAACTTT GGACTAGCAA CGCCCCTTCC TACAGTTGCC CTCGCAGTAA CAGCACTTGT GGGTGTCTTG ACAGCAGTTT
TTATCTTCCA GTCAGCCTCG AAGAATTGA

>Vigan.08G043500.01
MALVQPSASL TLSVRDACVF TAPKYPPTAH FPHRNLITTR ASFIAGSPLL IRKNHGRKPT CKAMPVSIRC EQSTQQGNSL
DVWLGRLAMV GFAVAITVEI ATGKGLLENF GLATPLPTVA LAVTALVGVL TAVFIFQSAS KN*