GBrowse Details

Vigan.08G045000.01

Basic Information:
Name: Vigan.08G045000.01
Multiple alignment
Variant Information
Position: Chr08:3564831..3571529 (- strand)
Length: 6699
Functional Information:
Description: Similar to Uncharacterized protein. [I1NFX0, Glycine max]
InterPro: UNC-50 (IPR007881)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:10.84,9.38,14.49,9.91,13.54,10.92,15.78,13.78
Arabidopsis thaliana homolog: AT2G15240.1
Automatic updates:
Name: NM_001248514 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100500001 (LOC100500001), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3564831..3565554 (- strand)
Length: 724
Type: three_prime_UTR
Position: Chr08:3565555..3565619 (- strand)
Length: 65
Type: CDS
Position: Chr08:3565697..3565768 (- strand)
Length: 72
Type: CDS
Position: Chr08:3567353..3567475 (- strand)
Length: 123
Type: CDS
Position: Chr08:3567573..3567631 (- strand)
Length: 59
Type: CDS
Position: Chr08:3567832..3567900 (- strand)
Length: 69
Type: CDS
Position: Chr08:3567995..3568090 (- strand)
Length: 96
Type: CDS
Position: Chr08:3568418..3568508 (- strand)
Length: 91
Type: CDS
Position: Chr08:3570496..3570521 (- strand)
Length: 26
Type: CDS
Position: Chr08:3570766..3570833 (- strand)
Length: 68
Type: CDS
Position: Chr08:3571098..3571196 (- strand)
Length: 99
Type: CDS
Position: Chr08:3571197..3571529 (- strand)
Length: 333
Type: five_prime_UTR


>Vigan.08G045000.01
ACCAAATCAT AATGTATCAT GTATGTATGT ATGTATTGTG TATGATATGA TTGGGAAGGT TTTTTTTCTT CGTAAGATAG
AGTGGGTCAG AAGGTGATTA GAGTCCAGTA CCGAAATTGT AATCGGCCCA GGTTGGTGGT GTAGTCATTT TACTTTTCAG
TCCTTTCCCA TCCCATCTCG CATCTGTGAG AGAGTTCGAG GTAGCTACCG GAGAGAAACA CACAGAGATC GCAATCAACA
ACACATAACA GCACGACAGA GAATAATAGA ATCGTGAATC GTTTGCAGAA GAAGAGGTAA AGGAATCGAG AAGAGGAGTC
ATCGAAGCCA AAGATGTTAC CCACAGCTTC CAAAGGACGT TCTTCTTCTT CCTCTTCTTC CTCTCGACCT AATAATCCCA
TGCTGCTTCC CTACCTCCGC AGAATCATCA AGTGGCAACA AATGGATATT GAATACACCT TTTGGCAAAT GCTTCATCTA
TGTACGTCAC CGAAAGTTGT CTATCAGCAT ACTAAATATC ACAAACAAAC CAAGAATCAA TGGGCACGTG ATGACCCTGC
ATTTGTTGTG ATCTGCAGTC TTCTTTTGGC AGTTGCAACT TTGGCTTATT GTGCTGCGTA TGACCATAGT ACTGCCCATA
CACTTCTTGT TATCTTCTCA GTGTTGTTTT TCCACTTTGT ACTGACAGGT GTATTTCTGG CAACTTTTTG TTGGTTCCTG
ACTAACTCTT ATCTTCGAGA AGAGGCTCCA AATAGCTATG TGGTTGAACA ACGTGTTGAA TGGATGTATG CATTTGATGT
ACACTGCAAC TCTTTCTTCC CATTGTTTGT TTTGCTCTAT GTGATCCATT ATTTTGTATC TCCTCTATTG TTGGCTCATG
GTTTCATTCC AGTATTGCTC TCAAATCTTC TATTCATGGT GGGAGCTTCA TACTATCATT ATCTAAATTT CCTAGGTTAT
GATGTTCTGC CTTTTTTGGA GAGGACCACC TTTTTCCTGT ACCCCATTGG CATCGTAATT GTCCTTTCTC CTATTTTGAT
TTTAAGTGGT TTCAATCCAT CTAGATACTT TATGAACATG TACTTCAGTC GACAAATATG ATCGTTCCAG CTAGAACTTT
TGACCTATCG GTGTCCTTGA GGTTATAGAG TATTCGGAAA ACTATCACAT GAGAAGGCTT TGATGAATGT TTGATTGTTT
GTTTGAAGAA TGCATTGGCC CAGCAATGTC TCATTTTAGG CCTTCTAATA CTACTACCAA TCAAAGTTGG ACTGTAGCAA
GTCAGGGTAG TCAGTGTATT TTTTACAGTT ATTAGATAGA ATATTTGTTC AAATGAATAT ACTCATTGTA ATGAATTTTC
TTTGTCAATC CGGTAGCTTT CCTCCCGACA AAGAACAATT TATATTGATA TATTCTTTGA TGAGGTTAGA TACTTAAATG
AAAGGTCTTC CCATTAGCTC GTCACATAAG GAGTCATTGT TAACTTTTAG TTTCATTAGA AGCCACTCGA GCCAGGTACC
AGTAAGAGTT AGGGAGGAGC TGATCAAAGC CGGGGAGGGA GCATTTTGTA TGTATGATAT TTGCTGGTTA TGTATGTTAT
CTGACTGAAT ATTGCTTCAC TGTGAGGTGT TTGGTGGTTC AATGGCGAGT ACGGGCTACT TATAAAACTA TTTTAATGGG
CAACTCAATT TTTAAACCCG TAGGATAGTG ATGTTTGAAA AATATGTGTT ACCTAATGTC TACGCACGTG TATGATTTGG
ATGAGTCATC CGGGTAAAGA TATTTGAGCA TGGTTATAGG ATACTATCTT AATAGTGTAT TTGGA

>Vigan.08G045000.01
ATGTTACCCA CAGCTTCCAA AGGACGTTCT TCTTCTTCCT CTTCTTCCTC TCGACCTAAT AATCCCATGC TGCTTCCCTA
CCTCCGCAGA ATCATCAAGT GGCAACAAAT GGATATTGAA TACACCTTTT GGCAAATGCT TCATCTATGT ACGTCACCGA
AAGTTGTCTA TCAGCATACT AAATATCACA AACAAACCAA GAATCAATGG GCACGTGATG ACCCTGCATT TGTTGTGATC
TGCAGTCTTC TTTTGGCAGT TGCAACTTTG GCTTATTGTG CTGCGTATGA CCATAGTACT GCCCATACAC TTCTTGTTAT
CTTCTCAGTG TTGTTTTTCC ACTTTGTACT GACAGGTGTA TTTCTGGCAA CTTTTTGTTG GTTCCTGACT AACTCTTATC
TTCGAGAAGA GGCTCCAAAT AGCTATGTGG TTGAACAACG TGTTGAATGG ATGTATGCAT TTGATGTACA CTGCAACTCT
TTCTTCCCAT TGTTTGTTTT GCTCTATGTG ATCCATTATT TTGTATCTCC TCTATTGTTG GCTCATGGTT TCATTCCAGT
ATTGCTCTCA AATCTTCTAT TCATGGTGGG AGCTTCATAC TATCATTATC TAAATTTCCT AGGTTATGAT GTTCTGCCTT
TTTTGGAGAG GACCACCTTT TTCCTGTACC CCATTGGCAT CGTAATTGTC CTTTCTCCTA TTTTGATTTT AAGTGGTTTC
AATCCATCTA GATACTTTAT GAACATGTAC TTCAGTCGAC AAATATGA

>Vigan.08G045000.01
MLPTASKGRS SSSSSSSRPN NPMLLPYLRR IIKWQQMDIE YTFWQMLHLC TSPKVVYQHT KYHKQTKNQW ARDDPAFVVI
CSLLLAVATL AYCAAYDHST AHTLLVIFSV LFFHFVLTGV FLATFCWFLT NSYLREEAPN SYVVEQRVEW MYAFDVHCNS
FFPLFVLLYV IHYFVSPLLL AHGFIPVLLS NLLFMVGASY YHYLNFLGYD VLPFLERTTF FLYPIGIVIV LSPILILSGF
NPSRYFMNMY FSRQI*