GBrowse Details

Vigan.08G045100.01

Basic Information:
Name: Vigan.08G045100.01
Multiple alignment
Variant Information
Position: Chr08:3572062..3574868 (+ strand)
Length: 2807
Functional Information:
Description: Similar to Uncharacterized protein. [I1LEJ5, Glycine max]
InterPro: Protein of unknown function DUF1168 (IPR009548)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:42.36,33.91,18.75,19.40,19.43,14.31,10.81,18.16
Arabidopsis thaliana homolog: AT2G15270.1
Automatic updates:
Name: NM_001253150 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max PRKR-interacting protein 1-like (LOC100805970), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr08:3572062..3572331 (+ strand)
Length: 270
Type: five_prime_UTR
Position: Chr08:3572332..3572574 (+ strand)
Length: 243
Type: CDS
Position: Chr08:3574318..3574593 (+ strand)
Length: 276
Type: CDS
Position: Chr08:3574594..3574868 (+ strand)
Length: 275
Type: three_prime_UTR


>Vigan.08G045100.01
AAAGAACATC TATAAATATT GAAAATGGTT ACTATTTAAC GGTAGTTTTC GAATGAAATC GTGAAATCCC CCGAATTCAT
GAGGGGATTG GGATTTTCTT TGAGAGATAA ACCGACACAA CAAATGTTAT TTCCTCTTTC CCTTGTAATT CTAAGGGTAT
GAAGAACATC TGTTTCGAAC TAGGATCTTA AAATCACTAA ACTAACCTTG TCTGCAGAAT TAGGGTTCGG GTCTAAAGTG
AAAATTTAGG GTTTTTGTAA ATCCCATAAA ATGTCGACGG GCAAACCCAG AGATGCTGAT TTTCAGATTG TCGCAGCGCC
AGGAAATTCG AAACCGCCCC TCCCGCCAAC AGCAGCAGCA TCGAGTGCGC TAGTGGAGTA TACTCCTGTC GTTTTCAAGG
AGGAAGAGGA GGACCTAGAA GTCAAGCTGC GACGTATTAT CGACAATGTT CCCGTTCGTG TTAGCAACAC TTCTGGTAGT
TCCGCCGGTT CAGGATCCGG CGACTTCCAC CAGTATCGGC AGATGAGACG CAAGGAGCAA GATCGTCTTG CTAGAATGGA
AGTCGATTAC CAGAAGAGAA AAGAGTTGGC AGAATTTAAT TTAAGAAGGG AGGAAAGATT AAAAGCAGCA GAGGAAAGGA
CAGCAAAGAA GCGAGCAAAG CGTCAAAAGA AGAAGCAAAG GAAAAAGGAG AAAAAGATAA AATTAAATGC CGAAGGAGAA
CAGCAGCGAG AGAAACAAGA GTCCTCAAGT GATGGAGACA CGGACAACAG TGAGGAGCCA GCACCGTAAA ACAAGCTTTG
GTGGTAGGTG GTAATATCTG GCTTAGTTAA AACACAGGCA TGACTCTGGG TTTTCATTAT TTGTATCCCA AAAGTGATTT
ATGTGGTACT TTGTTCGAAA GGGATTTAAG CAACAAAATT GATGCAGTGA GAAAACAATT CTTACAAGCT TTTCTACTAA
AAAGAATCCA TCTACTCATT GAATTTAATG ATGTAGTATA AAAGAAAATG GTAACACGAA ATGTTACACA AATCAACTTA
CATCCTATGC GTAAAATATC CCGA

>Vigan.08G045100.01
ATGTCGACGG GCAAACCCAG AGATGCTGAT TTTCAGATTG TCGCAGCGCC AGGAAATTCG AAACCGCCCC TCCCGCCAAC
AGCAGCAGCA TCGAGTGCGC TAGTGGAGTA TACTCCTGTC GTTTTCAAGG AGGAAGAGGA GGACCTAGAA GTCAAGCTGC
GACGTATTAT CGACAATGTT CCCGTTCGTG TTAGCAACAC TTCTGGTAGT TCCGCCGGTT CAGGATCCGG CGACTTCCAC
CAGTATCGGC AGATGAGACG CAAGGAGCAA GATCGTCTTG CTAGAATGGA AGTCGATTAC CAGAAGAGAA AAGAGTTGGC
AGAATTTAAT TTAAGAAGGG AGGAAAGATT AAAAGCAGCA GAGGAAAGGA CAGCAAAGAA GCGAGCAAAG CGTCAAAAGA
AGAAGCAAAG GAAAAAGGAG AAAAAGATAA AATTAAATGC CGAAGGAGAA CAGCAGCGAG AGAAACAAGA GTCCTCAAGT
GATGGAGACA CGGACAACAG TGAGGAGCCA GCACCGTAA

>Vigan.08G045100.01
MSTGKPRDAD FQIVAAPGNS KPPLPPTAAA SSALVEYTPV VFKEEEEDLE VKLRRIIDNV PVRVSNTSGS SAGSGSGDFH
QYRQMRRKEQ DRLARMEVDY QKRKELAEFN LRREERLKAA EERTAKKRAK RQKKKQRKKE KKIKLNAEGE QQREKQESSS
DGDTDNSEEP AP*